Results for "long"
Top-level pages
Phylogenetic for Bioinformatics
...evolutionary connections between organisms are represented graphically through phylogenetic trees. Due to the fact that evolution takes place over long periods of time that cannot b...3943 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
Global overview papers Next generation quantitative genetics in plants. Jiménez-Gómez, Frontiers in Plant Science 2:77, 2011 Full Text [equally relevant...3776 days ago
Perl one-liner for bioinformatician !!!
...quo;g”,”c”)[rand 4] } 1..20'#Generates a 20 nucleotide long random residue.perl -le 'print "a"x50'#generate a string of ‘x’ 50 character longperl -le 'print join ", ", map...3625 days ago
- ...s: reformat.sh in=x.fq out=y.fq rcomp For reformatting a file with very long sequences, Reformat will need...g length on the human genome (which has individual sequences over 200Mbp long) to 70 characters: reformat.s...
2711 days ago
- ...ile System ls — list items in current directory ls -l — list items in current directory and show in long format to see perimissions, s...
2871 days ago
Genome Assembly Tools and Software - PART1 !!
...sembly Benchmark for Nanopore long reads DNA Assembly Bench...hort INDELs, but also retains long deletions, novel sequence ins...dash; Haplotype Assembly from Long Gapless Reads A fast and m...Celera and Phrap for typical longer reads by Sanger sequencing,...2683 days ago
Awesome perl frameworks, libraries and software - PART 1
...n - Expanded perl version of John Gruber's original Markdown --- No longer under active development si...ail_align - SailAlign is an open-source software toolkit for robust long speech-text alignment impleme...2486 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...ntinuous assembly (fully resolved chromosome arms) from third-generation long and noisy reads (10 kbp) usin...h Software (Java) https://github.com/marbl/MHAP Miniasm Assembler of long noisy reads (SMRT, ONT) using...2368 days ago
- ...[default: auto-detect] As you can see this is also a “pipeline” of tools that can be switched on or off. SPAdes takes quite a long time, so for the purposes of...
2348 days ago
Run miniasm assembler on nanopore reads !
Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outputs an assembly...2327 days ago
