Results for "long reads"
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Nucl2Vec: Local alignment of DNA sequences using Distributed Vector Representation
We demonstrate a novel approach forlocal alignment of DNA reads with respect to reference genome.For this process we have used Skip-gram model for creatingencoding(Nucl2Vec) and k-nearest neighbor...1143 days ago
Comparison of Short Read De Novo Alignment Algorithms
Excellent article to introduce different sequencing methods along with tools for de novo assembly of sequencing reads and their relevant references. Title: Comparison of Short Read De Novo Alignment Algorithms Author: Nikhil Gopal3907 days ago
Latest paper on comparison of mapping tools
A. Hatem, D. Bozdag, A. E. Toland, U. V. Catalyurek "Benchmarking short sequence map...ediawiki/bfast/index.php?title=Main_Page SHRiMP (for AB SOLiD color-space reads) http://compbio.cs.toronto.e...3893 days ago
Bioinformatics software for biologists in the genomics era
The genome sequencing revolution is approaching a landmark figure of 1000 completely sequenced genomes. Coupled wi...mming infrastructure often employed for the analysis of large numbers of genes, long...3783 days ago
shovill: Assemble bacterial isolate genomes from Illumina paired-end reads
Shovill is a pipeline which uses SPAdes at its core, but alters the steps before and after the primary assembly step to get similar results in less time. Shovill also...1216 days ago
- RNA Seq Basic Galaxy Tutorial RNA-...uman genomic DNA using a small set of reads from chromosome 22. Advanced...es as its input a BAM file of aligned reads and generates a list of likel...such as a quality control of the raw reads, processing of the raw reads...
3650 days ago
Orione – a web-based framework for NGS analysis in microbiology
End-to-end NGS microbiology data analysis requires a diversity of tools covering bacterial resequencing, de novo assembly, scaffolding, bacterial RNA-Seq, gene annotat...3571 days ago
Bioinformatics algorithms tutorials
Useful bioinformatics tutorial, such as De Bruijn Graphs for NGS AssemblyAlgorithms for PacBio ReadsSoftware and Hardware Concepts...3600 days ago
Integrative Genomics Viewer (IGV) tutorial
The Integrative Genomics Viewer (IGV) from the Broad Center allows you to view sever...les involved in any NGS analysis that employs a reference genome, including how reads from a dataset are mapped, ge...3581 days ago
- Google Genomics provides an API to store, process, explore, and share DNA sequence reads, reference-based alignments,...
3485 days ago
