Results for "long reads"
Bio-Scripts
Installing Busco version 4.0.6
(base) jit@jit-HP-Pro-3335-MT: conda install -c bioconda -c conda-forge busco=4.0.6 Collecting package...p bioconda/linux-64::perl-file-temp-0.2304-pl526_2 perl-getopt-long bioconda/linux-64::perl-getopt-long-...1465 days ago
- ➜ Tools git:(master) ✗ git clone git://github.com/bcgsc/bloomfilter.git...gcc -E checking for grep that handles long lines and -e... /bin/grep ch...gcc -E checking for grep that handles long lines and -e... /bin/grep ch...gcc -E checking for grep that handles long...
2163 days ago
Perl subroutine to read genome/reads fasta file !
sub readSeqFromFasta{ my $file = $_[0]; my (%map,$id,$seq); open(IN,$file) or die("Cannot open file for reading $file:$!\n"); while(){ chomp; if($_ =~ /^>/...2145 days ago
- ➜ trinityrnaseq-Trinity-v2.6.6 gi...building a k-mer catalog from reads) -- ------------------------..._normalization/tmp_normalized_reads Normalization complete....6.6/trinity_out_dir/chrysalis/readsToComponents.out > /home/urbe/...6/trinity_out_dir/partitioned_reads.files.list.ok Monday, July 9...
2139 days ago
- ➜ bin git:(master) ✗ ./fastq-dump...split into individual reads --split-spot...Split spots into individual reads Full Spot Filters...ce Filters for individual reads Applied only with --spl...reads and above are ignored. -G...
2138 days ago
Install Parrot Virtual Machine !
.../Parrot/Config/Generated.pm" failed, '.' is no longer in @INC; did you mean do "....auto::thread - Does your system have threads.......................yes.........yes, C99. auto::mathl - Test for long math support.....................1549 days ago
Long reads mapper bash script !
#!/bin/bash #only for LONG READS mapping #USAGE: runMapper.sh minimap2 ref.fa reads.fa/fq 48 ont echo -e "This is a bash scrip to map your long reads and make it visualization re...$bwaMemLoc mem $refFasta $longReads -t $thread > $fileName.out.sa...2134 days ago
- ➜ BorisTrinityAssembly /home/urbe/Tools/t...arated --left= Left reads file(s) in FASTQ format, comm...rated --right= Right reads file(s) in FASTQ format,...nds [ INFO] 2018-07-13 14:54:34 : No reads provided, skipping read diagn...
2135 days ago
Installing Porechop on Ubuntu !
➜ Tools git:(master) ✗ git clone https://...[-v VERBOSITY] [-t THREADS] [-b BARCODE_DIR]..._THRESHOLD] [--check_reads CHECK_READS] [--scoring_schem...adapters found at the ends of reads (default: 2) --end_thresho...2118 days ago
- ➜ Tools git:(master) ✗ git clone https://github.com/Nextomics/nextsv.git Cloning into 'nextsv'... remote: Cou.../src/realign/SWCPU.cpp:30:71: warning: format ‘%llu’ expects argument of type ‘long long...
2110 days ago
