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Comment on "Benchmarking Perl Module !"
...ou want to benchmark. Here's an example of a benchmark subroutine that calls a function from a hypothetica...ule to other modules or to previous versions of your own module. You can also use other functions from the...430 days ago
Comment on "Short-read assembly using Spades !"
...ses. This step can be performed using various tools such as Trimmomatic or FastQC...the assembled genome. This can be done using tools such as QUAST or BUSCO. These...parameters used for SPAdes and the evaluation tools may vary depending on the spe...430 days ago
- There are several tools available for short read simulators t...rent read lengths, error rates, and coverage levels. The wgsim tool is also open-...g Illumina, PacBio, and Oxford Nanopore. It can also simulate different types of...
430 days ago
Comment on "How to install Perl modules manually, using CPAN command, and other quick ways"
...s into your conda-directory. When you install packages via cpan it will also print the folder perl is installing the package into. If you want to be extra-sure, you can also install most Perl packages v...431 days ago
Comment on "Short-read assembly using Spades !"
...mbled contigs. The contigs will be saved in a file named contigs.fasta. You can view the contigs using a text editor or a genome browser. SPAdes also provides several options for...435 days ago
Comment on "Tools for Sequence translation !"
...ic and transcriptomic data. There are several tools available for sequence transl...nces. It supports several genetic codes and can also perform reverse translation...s a desktop application that provides several tools for sequence analysis, includ...435 days ago
Comment on "Tools for Differential expression analysis"
...expressed between two or more conditions or groups. There are several tools available for performing diff...ifferential expression. These are just a few examples of the many tools available for differential ex...435 days ago
Comment on "Tools for RNA classification"
...There are several tools available for RNA classificat...ons. Here are some commonly used tools: Infernal: Infernal is a...their corresponding covariance models. It is based on Infernal and...o predict tRNA genes. These tools can be used individually or i...435 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
...n: Annotate the genes in each genome using gene prediction software or tools such as MAKER. Identify orth...logous genes: Identify the orthologous genes between the genomes using tools such as OrthoFinder or OrthoM...438 days ago
Comment on "ncbi-datasets-cli -- Quickstart: command line tools !"
(base) [jnarayan@hn1 TOOLS]$ curl -o datasets 'https://ftp.ncbi.nlm.nih.gov...:32 0:00:32 --:--:-- 425k(base) [jnarayan@hn1 TOOLS]$ curl -o dataformat 'https:/...:23 0:00:23 --:--:-- 558k(base) [jnarayan@hn1 TOOLS]$ chmod +x datasets dataforma...895 days ago
