Results for "maf"
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Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.2913 days ago
- maftools - An R package to summarize, analyze and visualize MAF files. Introduction. With adva...cs, Mutation Annotation Format (MAF) is being widley accepted and...analyze, annotate and visualize MAF files in an efficient manner...ayakonda, A. and H.P. Koeffler, Maftools: Efficient analysis, vis...
2642 days ago
- A tool for converting for recovering synteny blocks from multiple alignment (in MAF fromat) This tool is a standalone version of Ragout module [http://fenderglass.github./Ragout]
2552 days ago
jobTree based python wrapper to run the genome simulation tool suite Evolver
...s of a completed simulation; extract pairwise multiple alignment files (.maf) from leaf and branch nodes from a completed simulation and with the help of mafJoin, join them together into...2347 days ago
D-GENIES: A tool for Dotplot large Genomes in an Interactive, Efficient and Simple way
...ted into an interactive plot written with d3.js library. D-Genies also allows to display dot plots from other aligners by uploading their PAF or MAF alignment file. http://dge...2162 days ago
maftools : Summarize, Analyze and Visualize MAF Files
...Genomics, Mutation Annotation Format (MAF) is being widely accepted and...s to summarize, analyze, annotate and visualize MAF files in an efficient manner...any in-house studies as long as the data is in MAF format....1237 days ago
- ...in Cancer Genomics, Mutation Annotation Format (MAF) is being widely accepted and...s to summarize, analyze, annotate and visualize MAF files in an efficient manner...any in-house studies as long as the data is in MAF format. https://www.biocondu...
878 days ago
- To convert a VCF into a MAF, each variant must be mapped to only one of all...gh to a Splice_Site, can be labeled as either in MAF format, but not as both. This...at this project attempts to standardize. The vcf2maf and maf2maf scripts leave mos...
878 days ago
CrossMap: program for genome coordinates conversion between different assemblies
...h37)). It supports commonly used file formats including BAM, CRAM, SAM, Wiggle, BigWig, BED, GFF, GTF, MAF VCF, and gVCF.838 days ago
