Results for "matches"
Blogs
Tools to detect synteny blocks regions among multiple genomes
...ge. The left of a 'SyntenyView' page displays a diagram of chromosomes with blocks of conserved synteny. The right of a page shows homology matches between individual genes with...2616 days ago
BBTools for bioinformatician !
...n, insertion, or deletion (X, I, D). Exact matches when mapping small reads (e.g...se the following flags to report only perfect matches. Code: ambig=all vslow pe...can use "hdist" and "edist" flags to allow mismatches, or get a complete list of fl...2277 days ago
- +6 more Blogs
Bookmarks
- ...teins on a genome-wide basis. It works by selecting potential ortholog matches from a reference database of amino acid sequences, then using these matches to calculate a lineage probab...
2880 days ago
- ...ng a modified backward search on a memory-efficient implementation of the Burrows-Wheeler transform, which finds maximum exact matches (MEMs), optionally allowing mismatches in the protein alignment. The...
2875 days ago
- +8 more Bookmarks
Top-level pages
- ...to different basical principles. Recursive or iterative A recursive algorithm is one that calls itself repeatedly until a certain condition matches. It is a method common to fun...
3952 days ago
Perl one-liner for bioinformatician !!!
..."%-5d %s", $., $_ if /regex/' #Left align lines with 5 white spaces if matches a pattern (perl -ne 'printf "...++ if /regex/; END {print $a+0}' #print the total number of lines that matches the patternperl -alne 'print...3634 days ago
- +7 more Top-level pages
Wire posts
News
- ...s that are a regular source of error in indel calling. When Scalpel assembles an exon, it collects reads that map to that exon (including partial matches), splits them into k-mers, an...
3552 days ago
Webinar on Streamlining large scale analysis using the Strand NGS Pipeline Manager on 24 Feb 2016
...nd share them with other Strand NGS users. Finally, we will show a brief glimpse of an elaborate pipeline that aligns reads, filters poor-quality matches, computes coverage metrics, i...3018 days ago
- +1 more News
Video
GenePeeks: Protecting our Children
...zing thousands of "digital babies" pre-pregnancy. Our initial focus is the donor sperm industry, where we help sperm bank clients avoid donor matches that carry a high risk of pas...3848 days ago
Bio-Scripts
Read lines from input file – print lines that match a regular expression
#!/usr/bin/perl use strict; use warnings; my $line; #read the line-by-line for each line ask if it matches the regex print it if it matches while($line = ){ chomp $line; i...2923 days ago
Retrieve NCBI GenBank records with a range of accession numbers
#!/usr/bin/perl #FILE: ncbi_search.pl #AUTH: Paul Stothard (paul.stothard@gmail.com) use warnings; use strict; use Getopt::Long; use LWP::Simple; use URI::Es...2922 days ago
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Tags
LAMSA: fast split read alignment with long approximate matches
LAMSA (Long Approximate Matches-based Split Aligner) is a novel split alignment approach with faster speed and good ability of handling SV events. It is well-suited to align long reads (over thousands of base-pairs). LAMSA takes takes the advantage of the rareness of SVs to implement a specifi...Tags: LAMSA, fast, split, read, alignment, long, approximate, matches
2188 days ago
Comments
Comment on "Basic command-line to run BLAST"
...uence to a database of known sequences and identifies the most similar matches. This is useful for identifyi...uery sequence into smaller segments, called "words," and searching for matches to those words in the databas...427 days ago
- ... Find regex in reference sequence and show matches as an additional &...
1526 days ago
