Results for "memory"
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Rainbow: an integrated tool for efficient clustering and assembling RAD-seq reads
Rainbow is developed to provide an ultra-fast and memory-efficient solution to clustering and assembling short reads produced by RAD-seq. First, Rainbow clusters reads using a spaced...2026 days ago
- ...t makes use of succinct de Bruijn graph (SdBG) to achieve low memory assembly. MEGAHIT can op...GPU-accelerated version of MEGAHIT has been tested on NVIDIA GTX680 (4G memory) and Tesla K40c (12G memory)...
2000 days ago
lordFAST: sensitive and Fast Alignment Search Tool for LOng noisy Read sequencing Data
...nologies to a reference. lordFAST not only has higher sensitivity than the available alternatives, it is also among the fastest and has a very low memory footprint.1987 days ago
GRAbB: Selective Assembly of Genomic Regions, a New Niche for Genomic Research
GRAbB is shown to be more efficient than MITObim in terms of speed, memory and disk usage. The other functionalities (handling multiple targets simultaneously and extracting homologou...1926 days ago
- ...stage to align arbitrarily long genome sequences using a small on-chip memory, that provides better quality alignments at 2× improvement in memory and speed over the previously...
1849 days ago
MSAProbs - Parallel and accurate multiple sequence alignment
..., ProbCons and Probalign. In addition, MSAProbs is optimized for shared-memory CPUs by employing a multi-threaded design, and further parallelized for distributed-memory systems using MPI to overcome...1762 days ago
Π-cyc: A Reference-free SNP Discovery Application using Parallel Graph Search
...ch makes the assembly process produce an excessive number of false positive cycles. Our solution is to search the graph in multicores shared memory parallel mode using graph dec...1560 days ago
Rcorrector: efficient and accurate error correction for Illumina RNA-seq reads
...ethod (SEECER) designed for RNA-seq reads, and is more time and memory efficient. With a 5 GB memory footprint for 100 million rea...ers; does not affect the correctness of program but affects the memory usage (default: 100000000)...1552 days ago
- ...on the AI::MXNet, a Perl interface to Apache MXNet, a modern and powerful machine learning library. If you're interested in refreshing your memory or just new to the series, pl...
1540 days ago
The wavefront alignment (WFA) algorithm
...mming algorithms that run in quadratic time, the WFA runs in time O(ns), proportional to the read length n and the alignment score s, using O(s^2) memory. Moreover, the WFA exhibits s...1407 days ago
