BOL: Results for "metagenomic"

Results for "metagenomic"

- Surabhi Chaudhary@surabhi
BBTools for bioinformatician !
...robability that a read be generated from that scaffold. So, if you concatenate together 20 bacterial genomes, you can run randomreads and get a metagenomic-like distribution. It could a...
2265 days ago
- Neelam Jha@neelam
Frequently used bioinformatics tools for viral genome analysis !
...ed k-mer counting on a PC. Deorowicz, S., Debudaj-Grabysz, A. & Grabowski, S. BMC Bioinformatics 14, 160 (2013). Kraken: Kraken: ultrafast metagenomic sequence classification using...
1041 days ago
+1 more Blogs

- Jit@jit.aber
Centurion
...se applications, including de novo genome assembly, deconvolution of metagenomic samples, and inference of cen...data of budding yeast and a human malaria parasite. We then use two metagenomic samples with relatively low c...
2999 days ago
- Neelam Jha@neelam
ALE: a Generic Assembly Likelihood Evaluation Framework for Assessing the Accuracy of Genome and Metagenome Assemblies
...nsert length (for paired-end reads), sequencing coverage, read alignment and k-mer frequency. ALE pinpoints synthetic errors in both single and metagenomic assemblies, including single-...
2925 days ago
+30 more Bookmarks

- Abhimanyu Singh@abhimanyu
Spades tutorial PDF
...mbly of metagenomes and transcriptomes as well as assembly of putative plasmids and biosynthetic gene clusters from whole-genome sequencing and metagenomic datasets.
818 days ago

- Rahul Nayak@rahul
List of bioinformatics open source projects/software.
...cation") http://wolbachia.biology.virginia.edu/WuLab/Software.html Metagenomics analysis software Anduril...sting of gap4, gap5 and spin. STAMP Software package for analyzing metagenomic profiles that promotes &lsquo...
3751 days ago
- Jit@jit.aber
Genome Assembly Tools and Software - PART1 !!
...COCACOLA – Binning Metagenomic Contigs using Sequence COmpos...Xander – Gene-targeted Metagenomic Assembler Metagenomics can...16S ribosomal RNA Genes from MetagenOmic data an assembly tool for...nteMAP 1.0 – Integrated Metagenomic Assembly pipeline for NGS Sho...
2680 days ago
+4 more Top-level pages

- Jit@jit.aber
#Clustering metagenomic #contigs on #tetranucleotide frequency http://cgat.readthedocs.io/en/latest/recipes/metagenome_contigs_kmers.html
2614 days ago
- Jit@jit.aber
#NLP-MeTaxa: A Natural Language Processing Approach for #Metagenomic #Taxonomic #Binning Based on Deep Learning https://github.com/padriba/NLP_MeTaxa/
971 days ago

- BioStar@biostar
NCBI to assist in Virus Hunting Data Science Hackathon
...ence in computational virus hunting or adjacent fields to identify known, taxonomically-definable and novel viruses from a few hundred thousand metagenomic datasets that we’ll put...
1992 days ago
- BioStar@biostar
SPADes team announce new version SPADes v3.15
...the assembly of transcriptomic and metatranscriptomic data of full-length coronaviridae genomes; - Meta-Viral and RNA-Viral pipelines for metagenomic and metatranscriptomic data d...
1200 days ago

- San Mauro Martín@Ismaelsmm
Economical Opportunity transfere
...al research (Research Centers in Nutrition and Health, from Spain), focus in genomic, specialy in nutrigenomic and nutrigenetics, epigentic and metagenomic. My research groups (4 in my...
3661 days ago
- Surabhi Chaudhary@surabhi
Bioinformatics Project Assistant at Vector Control Research Centre (VCRC), Puducherry.
...y tools. Age: Not exceeding 30 years on the last date of receipt of application Job work: Molecular modelling studies, Database curation, Metagenomic studies on Dengue virus Ad...
3206 days ago
+1 more Opportunity posts

- Hypercyclic@Hypercyclic
PIT Bioinformatics Group
...implementation of the AMPHORA2 workflow for phylogenetic analysis of metagenomic shotgun sequencing data. - AmphoraVizu: Chart visualization for metagenomics analysis tools AMPHORA2 and...
3240 days ago
- BioStar@biostar
Gupta Lab
...ls; (iv) The use of these lineage-specific probes with predicitive ability to identify/explore the presence of different groups of organisms in metagenomic sequences from various enviro...
1948 days ago

- Jit@jit.aber
Downloading GATK !
...ub-interval files. -------------------------------------------------------------------------------------- Metagenomics: Tools that perform metagenomic analysis, e.g. microbial comm...
2069 days ago
- Surabhi Chaudhary@surabhi
Installing Covid19 Environment !
...age does not include: * GRIDSS (needed for structural variants detection) * SILVA 16S rRNA database (needed for reference genome detection in metagenomic datasets) * BUSCO tools and...
917 days ago