GeneProf: analysis of high-throughput sequencing experiment
...h-throughput sequencing platforms (RNA-seq and ChIP-seq; "Next-Generat...sis of ChIP-seq and RNA-seq data in one place, p...of other external data (e.g. from microarrays). Comprehensive Reso...data from GeneProf may be used externally (cp. Section 'Web API...2496 days ago
2350 days ago
HiC-Pro: an optimized and flexible pipeline for Hi-C data processing
HiC-Pro was designed to process Hi-C data, from raw fastq files (paired-end Illumina data) to the normalized contac...actice, HiC-Pro can be used to process dilution Hi-C, in situ Hi-C, DNase Hi-C, Mic...2343 days ago
2322 days ago
snakepipes: A toolkit based on snakemake and python for analysis of NGS data
snakePipes are flexible and powerful workflows built using snakemake that simplify the analysis of NGS data. DNA-mapping* ChIP-seq* RNA-seq* ATAC-seq* scRNA-seq Hi-C Whole Genome Bisul...1803 days ago
PLAR: Pipeline for lncRNA annotation from RNA-seq data
Due to several requests, we are releasing an assingment of...mparing human GENCODE genes (from GENCODE v30) to lncRNAs from other species identifie...s Assembly Code Transcriptome lncRNAs Protein-coding...850 days ago
SciLifeLab tutorial for bioinformatics analysis !
SciLifeLab is a national center for molecular biosciences...bly 2016 November - Uppsala2017 November - Uppsala RNA-seq course 2015 October - Up...- Uppsala2017 March - Uppsala2017 November - UppsalaRNAseq tutorials R Programming F...2211 days ago
Scallop: reference-based transcriptome assembler for RNA-seq
Scallop is an accurate reference-based transcript assembler. Scallop features its high accuracy in assembling multi-exon transcripts as well as lowly expressed transc...2190 days ago
HISAT2: a fast and sensitive alignment program for mapping next-generation sequencing reads
HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) to a population of human gen...2190 days ago
P_RNA_scaffolder: a fast and accurate genome scaffolder using paired-end RNA-sequencing reads
P_RNA_scaffolder, a fast and accurate tool using paired-end RNA-sequencing reads to scaffold genomes. This...of both protein-coding genes and circular RNAs were almost completely recov...cially for long proteins and long circular RNAs.2155 days ago