Qualimap2: Evaluating next generation sequencing alignment data
Qualimap 2 is a platform-independent application written in Java and R that prov...pes of experiments include: Whole-genome sequencing Whole-exome sequencing RNA-seq (speical mode available)...2064 days ago
EvidentialGene: tr2aacds, mRNA Transcript Assembly Software
Quality assessment of this mRNA Transcript Assembly Software is described in EvidentialGene_quality....ow the only way to get it is to produce way too many assemblies on a good RNA data set, with several method...2044 days ago
kallisto: a program for quantifying abundances of transcripts from bulk and single-cell RNA-Seq data
kallisto is a program for quantifying a...transcripts from bulk and single-cell RNA-Seq data, or more generally o...alignment. On benchmarks with standard RNA-Seq data, kallisto ...chter, Near-optimal probabilistic RNA-seq quantification, Nature Bi...1946 days ago
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iRNAD: a computational tool for identifying D modification sites in RNA sequence
iRNAD, for identifying D modification sites in RNA sequence. In this predictor, the RNA samples derived from five species were encoded by nucleotide chemical property and nucleotide density. Support vector machine was utilized to perform the classification. http://lin-group.cn/server/iRNAD/1817 days ago
MFannot : a program for the annotation of mitochondrial and plastid genomes
MFannot is a program for the annotation of mitochondrial and plastid geno...plastid genomes. It is a PERL wrapper around a set of diverse, external independent tools. It makes intense use of RNA/intron detection tools includ...1715 days ago
BioJupies: Automatically Generates RNA-seq Data Analysis Notebooks
With BioJupies you can produce in seconds a customized, re...nd interactive report from your own raw or processed RNA-seq data through a simple use...the page for access to unlimited private notebooks, RNA-seq datasets and alignment jo...1233 days ago
StringTie Transcript assembly and quantification for RNA-Seq
StringTie is a fast and highly efficient assembler of RNA-Seq alignments into potential transcripts. It uses a novel network flow algorithm as well as an optional de novo assembly s...1427 days ago
Rcorrector: efficient and accurate error correction for Illumina RNA-seq reads
Rcorrector has an accuracy higher than or comparable to existing methods, including the only other method (SEECER) designed for RNA-seq reads, and is more time a...1552 days ago