Results for "minimap2"
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minimap2: A versatile pairwise aligner for genomic and spliced nucleotide sequences
...clone https://github.com/lh3/minimap2 cd minimap2 && make # long seque...human.mmi test/MT-human.fa ./minimap2 -a MT-human.mmi test/MT-orang...ord Nanopore genomic reads ./minimap2 -ax sr ref.fa read1.fa read2....d command line options man ./minimap2.12163 days ago
Rebaler: program for conducting reference-based assemblies using long reads.
Rebaler is a program for conducting reference-based assemblies using long reads. It relies mainly on minimap2 for alignment and Racon for making consensus sequences...2073 days ago
Purge Haplotigs: Pipeline to help with curating heterozygous diploid genome assemblies
...id assembly. Identify pairs of contigs that are syntenic and move one of them to the haplotig 'pool'. The pipeline uses mapped read coverage and Minimap2 alignments to determine which...1983 days ago
Versatile genome assembly evaluation with QUAST-LG
...command! A short list of the new features (see CHANGES for all): Significant speedup achieved by both use of new fast aligner (minimap2) and the refactoring of align...1978 days ago
RaGOO: Fast Reference-Guided Scaffolding of Genome Assembly Contigs
...e-guided scaffolding of draft genomes. bioRxiv 2019. RaGOO is a tool for coalescing genome assembly contigs into pseudochromosomes via minimap2 alignments to a closely relat...1861 days ago
RaGOO: Fast Reference-Guided Scaffolding of Genome Assembly Contigs
...e-guided scaffolding of draft genomes. bioRxiv 2019. RaGOO is a tool for coalescing genome assembly contigs into pseudochromosomes via minimap2 alignments to a closely relat...1669 days ago
NextDenovo: string graph-based de novo assembler for TGS long reads
...ly 15% sequencing errors, and NextGraph can be used to construct a string graph with corrected reads. It also contains a modified version of minimap2 for adapting input and o...1599 days ago
pbmm2:A minimap2 frontend for PacBio native data formats
pbmm2 is a SMRT C++ wrapper for minimap2's C API. Its purpose is to support native PacBio in- and output, provide sets of recommended parameters, generate sorted output on-the-fly, and...1555 days ago
