Results for "multiple"
Bio-Scripts
Find and replace ambiguous characters in fasta file with Perl and Bioperl
...the ambiguous characters are repleced with the\n". "specified character. e.g. -m '?' will place ? to the ambigous characters.\n" . "If multiple files are given, sequences in...2912 days ago
- #USAGE: CI_normal(matrix[,c(x:y)],97.5) - multiple column from a normal distribution #USAGE: CI_tdist(matrix[,c(x:y)],97.5) - multiple column from a t distribution...
2869 days ago
Perl script to read multi fasta sequence one by one
...fastaSeq{$key}\n"; } sub readfasta { (my $file)=@_; my %sequence; my $header; my $temp_seq; #suppose fasta files contains multiple sequences; open (IN, "2219 days ago
Perl subroutine for reading multifasta file !
sub readfasta { (my $file)=@_; my %sequence; my $header; my $temp_seq; #suppose fasta files contains multiple sequences; open (IN, "2142 days ago
- ...p --bzip2 Compress output using bzip2 Multiple File Options Set...erbosity level of the program Use multiple times for more verbosity...
2124 days ago
- ...format --threads= Number of threads to use (default: 8) --merge-assemblies= Merge best contigs from multiple assemblies into...
2121 days ago
- ...teVariantCallingMetrics (Picard) Combines multiple Variant Calling Metrics files...Collect jumping library metrics. CollectMultipleMetrics (Picard)...amFiles (Picard) Merges multiple SAM and/or BAM files into a s...
2073 days ago
Pack a perl program with their dependencies on Ubuntu !
...;University of... Jit@jit.aber Sequence Tube Maps: displays multiple genomic sequences in the form of a tube mapBy Jit 5 days ago SequenceTubeMapsdisplaysmultiplegenomicsequencestubemapgraphma...1509 days ago
Tadpole is 250x faster than SPADes assembler !
...ror-correct reads. Tadpole has no upper bound for kmer length, but some values are not supported. Specifically, it allows 1-31, multiples of 2 from 32-62, multiples of 3 from 63-93, etc. Pleas...974 days ago
Run multiple bash command in screen !
#login to screen screen -r 123 #bash.sh srun --partition=compute --nodes=1 --ntasks-per-node=40 --pty bash.sh #Run and check the status in screen contol +A +D960 days ago
