Results for "noisy"
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BBTools for bioinformatician !
...het peak, the second will be the homozygous peak, and the rest will be repeat peaks. The peak caller is not perfect, though, so particularly with noisy data I would only rely on it...2264 days ago
Bookmarks
- ...consideration while each alignable region is extended as long as possible. Thus, Cgaln is not only fast and memory-efficient, but also can filter noisy outputs without missing the m...
2622 days ago
miniasm: very fast OLC-based de novo assembler for noisy long reads
...fast OLC-based de novo assembler for noisy long reads. It takes all-vs-a...mapping and (ii) assembly. Designed for long, noisy reads, they do not have a cor...assemblies are contiguous (i.e. long) but very noisy (i.e. full of errors) We sta...2344 days ago
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Top-level pages
Awesome perl frameworks, libraries and software - PART 1
...ignment implementing an adaptive, iterative speech recognition and text alignment scheme that allows for the processing of very long (and possibly noisy) audio and is robust to trans...2483 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...ssembly (fully resolved chromosome arms) from third-generation long and noisy reads (10 kbp) using a dimens...tware (Java) https://github.com/marbl/MHAP Miniasm Assembler of long noisy reads (SMRT, ONT) using the O...2364 days ago
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miniasm: very fast OLC-based de novo assembler for noisy long reads
Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outputs an assembly graph in the GFA format. Different from mainstream assemblers, miniasm does not have a consensus step. I...Tags: Ultrafast, de novo, assembly, long, noisy, reads, consensus
2344 days ago
rHAT: a seed-and-extension-based noisy long read alignment tool
rHAT is a seed-and-extension-based noisy long read alignment tool. It is suitable for aligning 3rd generation sequencing reads which are in large read length with relatively high error rate, especially Pacbio's Single Molecule Read-time (SMRT) sequencing reads.Tags: rHAT, seed-and-extension-based, noisy, long, read, alignment, tool, ont, pacbio
2044 days ago
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Comment on "Run miniasm assembler on nanopore reads !"
...e ultrafast tools for (i) mapping and (ii) assembly. Designed for long, noisy reads, they do not have a cor...therefore the resulting assemblies are contiguous (i.e. long) but very noisy (i.e. full of errors) We sta...2168 days ago
