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Next generation sequencing in R or bioconductor environment
There are many R software and bioconductor packages for NGS data analysis, some of th...ensible to store additional information about sequence ranges,...Rsamtools provides functions for parsing and inspecting samtoo...art.org). The package enables online retrieval of large amounts...3624 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
Commercial tools Strand NGS offers...ers Aligns exome data and performs variant calling an average...r, specifically tailored to Oxford Nanopore Reads, written in P...uo;extract causative variants for monogenic and sporadic geneti...al network”; can catch nonlinear relationships; “Th...2908 days ago
Worldwide funding agencies to fund your bioinformatics research !!
...onal Science Foundation: For the love of science! Head here when searching for ways to pay for that gargantu... These grants go towards doctors, nurses, and medical research...oviding incentive and support for highly qualified individuals in o...ation offers grants to select doct...2937 days ago
- alignment: the mapping of a raw sequence read to a location wit...reference genome. Alignment information is stored in the SAM or BAM file formats. bcftools: a set of comp...se pairs of alignment. FASTA Format: text format for storing r...two ends which are sequenced form a pair, and are frequently r...
2868 days ago
Awesome perl frameworks, libraries and software - PART 1
...tion and make recommendations for increased performance and stability. kraih/mo...p;- A lightweight application for searching and streaming video...l module and terminal command for generating secure memorable p...rg - Templates and stuff for the blogs.perl.org web site...2488 days ago
- RNA-sequencing (RNA-seq) has a wide variety of applications, but no single analysis pipeline c...nctional analysis, gene fusion detection and eQTL mapping. A survey of best practices for...
2350 days ago
Tools for bacterial whole genome annotation
RAST – Web tool (upload contigs), uses the subsyste...that the quality of functional information is not as good as RAST,...es and is not currently available for download or use outside of th...s KEGG's internal annotation tool for K n...le for download and can be tested onli...2330 days ago
Some useful Bioinformatics links
Reference-free prediction of rearrangement breakpoint reads | Bioinformatics | Oxford Academic https://academic.o...le sequence alignments | Bioinformatics | Oxford Academic http...embler based on the FMD-index for large genomes https://github...o/Bandage/ Codon Optimization OnLine...2240 days ago
Bioinformatics Training Courses At RASA LSI
RASA conducts comprehensive Life Science skill development training courses in Pune, India for working professionals, researchers...nt modules of courses such as Bioinformatics course, In silico Drug...s training and instructor-led live online...in Modeling and Simulation, Chemoinform...1641 days ago
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