Print the screenshot of read coverage remotely !
#Chrom_2:9700000-9760000 ASCIIGenome -ni --fasta A_vaga.NDPD.fasta -r Chrom_2:9700000-9760000 -x "save >> test.pdf" A_vaga.NDPD.fasta.out.sam.bam.sorted.bam1277 days ago
1209 days ago
1209 days ago
Install and set up i-adhore for synteny and wgd analysis ! -- step by step --
#Need to download i-adhore-3.0.01.tar.gz from https://wdiceryfd4rjn74bjhhtz2k5di--bioinformatics-psb-ugent-be.translate....read.h - found -- Performing Test...ome/urbe/anaconda3/envs/wgd/./testset -- Installing: /home/urbe...ome/urbe/anaconda3/envs/wgd/./testset/datasetII/ptr_lists_030210...1197 days ago
Bash online to update Linux OS
sudo bash -c 'for i in update {,full-,dist-}upgrade auto{remove,clean}; do apt-get $i -y; done'685 days ago
Tadpole is 250x faster than SPADes assembler !
...) Min ratio of 1st to 2nd-greatest path depth at high depth. b...) Min ratio of 1st to 2nd-greatest...gs with decreasing seed depth for this many iterations. contigp...ove reads that cannot be used for assembly....lap, but do not merge reads. testmerge=t Test kmer coun...970 days ago
Commands to Remove White Space In Text Or String Using Awk And Sed In Linux
text=" ATGGTV AGTGACCTAGAGTGATGA G GGRTTT" echo "$te...text" | sed 's/ \$//g' #Multiple space cat /tmp/test.txt | sed 's/[ ]\+/ /g' ec...t1" | awk '{ gsub(/[ ]+/," "); print }' cat /tmp/test.txt | awk '{ gsub(/[ ]+/," ")...950 days ago
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922 days ago
Bash script to simulate a genome !
...f BBTools/BBMap https://sourceforge.net/projects/bbmap/ /genet....gz # make reference for r...ave the paired-end reads # reformat.sh part of BBTools/BBMap ht...u/ mkdir -p /genetics/elbers/test/fly2/kmergenie-illumina-raw-r...30000bp cd /genetics/elbers/test/fly2 /genetics/elbers/bbma...911 days ago