Results for "options"
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Comment on "Short-read assembly using Spades !"
...ing a text editor or a genome browser. SPAdes also provides several options for tuning the assembly param...n. The SPAdes manual provides detailed information on how to use these options....435 days ago
Comment on "Basic docker commands !"
Start the docker container docker start [options] container_id Stop the docker container docker stop --time=20 container_id Kill a docker container docker kill [option] container_id987 days ago
Comment on "Basic docker commands !"
Attached the running docker Instead of using -i or -t options, use the attach command to connect to a running container: docker attach container_id987 days ago
Comment on "Calling variants in non-diploid systems"
...how many. Thus we will use the --pooled-continuous option of FreeBayes to generate frequency-based variant calls as well as some other options...1058 days ago
- Usage Summary Produce help page. Quickly check the software usage and available command line options. $ ./fastANI -h One to One. Compute ANI between single quer...
1116 days ago
Comment on "URMAP, an ultra-fast read mapper"
...pressed reads because decompression is typically more expensive than the additional file i/o time required to read the larger uncompressed file. OptionsThe FASTQ filename is specifie...1298 days ago
- ...fastq pairB_1.fastq pairB_2.fastq For single-end mode you supply the --single flag, as well as the -l and -s options, and list any number of FASTQ...
1375 days ago
Comment on "Estimate Genome Size"
# count k-mers (see jellyfish documentation for options) gzip -dc reads1.fastq.gz reads2.fastq.gz | jellyfish count -m 31 -o fastq.counts -C -s 10000000000 -U 500 -t 30 /dev/fd/0 #...1912 days ago
Comment on "HALC: High throughput algorithm for long read error correction"
...;short_reads.fa and then cat right_reads.fa >>short_reads.fa). Using AlignGraph runHALC.py long_reads.fa contigs.fa [-options|-options]...2106 days ago
- ...; \ genomeSize=<number>[g|m|k] \ [other-options] \ [-pacbio-raw | -pacbio-cor...equals '4700k' equals '4700000' Some common options: useGrid=string - Run under g...acBio reads and 0.144 for Nanopore reads. gridOptions=string - Pass string to the c...
2113 days ago
