Results for "output"
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...build to another (3) Convert both genome position and dbSNP rs number over different versions Run: liftOver input.bed hg18ToHg19.over.chain.gz output.bed unlifted.bed The outform...2156 days ago
Install ImageMagick from Unix Source
...king whether the C compiler works... yeschecking for C compiler default output file name... a.outchecking fo...n the C preprocessor... gcc -Echecking for a sed that does not truncate output... /bin/sedchecking for fgrep...2142 days ago
- ...orks... yes checking for C++ compiler default output file name... a.out checking...g++... g++ checking for C++ compiler default output file name... a.out checking...top after generating command list. # # # --output :name of direc...
2130 days ago
Converting a VCF into a FASTA given some reference !
...odified by others to convert InDels as well, e.g. this by David Eccles ./vcf2fq.pl -f <input.fasta> <all-site.vcf> > <output.fastq> https://github.com...2112 days ago
CANU genome assembly parameters !
...e \ -pacbio-raw \ ~/pacbio/dna/sample_reads.fastq.gz There is a brilliant section in documentation about parameter tweaking. The output directory contains will conta...1941 days ago
- ...-in if no files specified) # There is also an output field separator (OFS) that yo...t of like shell scripting, but to get the same output, the string # must match...e provided. The purpose of it is # usually to output some kind of final report, or...
1832 days ago
List of perl special symbols !
...mand line arguments $ARGV – special file handle for command line filenames $. – current line number $/ - input line delimiter $\ - output line delimiter $% - current...1556 days ago
Run bash script in Perl program !
...the return value is the command's STDOUT. 4. IPC::Open3 syntax: $output = open3(\*CHLD_IN, \*CHL...e shell. You can read about it more in the documentation: IPC::Open3. $output = open3(my $o ut, my $in...634 days ago
- ...] An informative parameter in the output to look at would be CPULoad....number of cores, and files to collect standard output and error at run time, for ex...pecify the fields you would like to see in the output of sqlog: sql...
666 days ago
Common steps for reads mapping !
...cal user interface. The specific command depends on the mapper being used, but typically involves specifying the input data, reference genome, and output file format. Evaluate th...420 days ago
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