Results for "package"
Bio-Scripts
Perl script to check perl modules and download NCBI, BUSCO, Taonomy, Silva databases !
..."exists \t blastDB, If not installed sucessfully, delete the folder and re-run it" fi echo -e "\nAll Done\n" echo -e "\nInstall R package install.packages('Ckmeans.1d.dp') \n" /;...1171 days ago
- ...conda install -c bioconda ragout Collecting package metadata (current_repodata.js...retry with next repodata source. Collecting package metadata (repodata.json): don...ed ([y]/n)? y Downloading and Extracting Packages sibelia-3.0.7 | 24.8...
1159 days ago
Install assembly-stat using conda !
vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install -c bioconda assembly-stats Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.1065 days ago
- ...SK:~/Downloads/setu/setu$ conda install -c bioconda ragout Collecting package metadata (current_repodata.js...rrent_repodata.json, will retry with next repodata source. Collecting package metadata (repodata.json): don...
1065 days ago
- vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install -c bioconda spades Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.
1065 days ago
- ...d scour zlib1g-dev Suggested packages: autoconf-archive gnu-sta...2-rsvg-2.0 The following NEW packages will be installed: autoco...Extracting templates from packages: 100% Selecting previously...lecting previously unselected package libtool. Preparing to unpack...
1065 days ago
Install trimmomatic using Conda !
...Downloads/setu/setu$ conda install -c bioconda trimmomatic Collecting package metadata (current_repodata.js...py37h06a4308_0 Proceed ([y]/n)? y Downloading and Extracting Packages certifi-2021.5.30 | 139...1065 days ago
Install grabseqs using conda !
vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install grabseqs -c louiejtaylor -c bioconda -c conda-forge Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.1065 days ago
Bash script to check installed bioinformatics program !
allTools=(bwa mummer trimomatic) decFlag=0; for name in ${allTools[@]}; do #echo "enter your package name" # read name dpkg -s $name &> /dev/null if [ $? -ne 0...1057 days ago
- ...l -c bioconda megahit Collecting package metadata (current_repodata.js...Solving environment: done ## Package Plan ## environment loca...- megahit The following packages will be downloaded: p...2.9 MB The following NEW packages will be INSTALLED: mega...
1057 days ago
