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Results for "paired-end"
Wire posts
Rahul Nayak
@rahul
Understanding
PairedEnd
(PE) mapping https://davetang.org/muse/2014/07/24/getting-started-paired-end-reads/ #PE #Paired #End #
PairedEnd
#Mapping #Map #Learn
2113 days ago
BioStar
@biostar
Understanding Paired End and Mate pair reads http://www.biorigami.com/wp-content/uploads/2012/02/
PAIREDEND
-MATEPAIR.pdf #Reads #Mate #Pairs #PE #Reads #MatePair
2067 days ago
BioStar
@biostar
MultiLine fasta to oneline fasta converter awk '/^>/ {printf("\n%s\n",$0);next; } { printf("%s",$0);} END {printf("\n");}' < file.fa #Multiline #Oneline
2067 days ago
Neelam Jha
@neelam
Multifasta to singleline fasta. $ awk '/^>/ {printf("\n%s\n",$0);next; } { printf("%s",$0);} END {printf("\n");}' < file.fa #Multi #Single #Fasta #Convert
2057 days ago
Jit
@jit.aber
fastq-pair: Match up paired end fastq files quickly and efficiently https://github.com/linsalrob/fastq-pair #fastq-pair #fastq
1847 days ago
LEGE
@lege
#Estimate the #insert #size with mapped reads $ head -10000 mappings.sam | awk '{ if ($9 > 0) { N+=1; S+=$9; S2+=$9*$9 }} END { M=S/N; print "n="N", mean="M", stdev="sqrt ((S2-M*M*N)/(N-1))}'
1637 days ago
LEGE
@lege
Multiline to singleline covert. $ awk '/^>/ {printf("%s%s\t",(N>0?"\n":""),$0);N++;next;} {printf("%s",$0);} END {printf("\n");}' < input.fa #Multi #Single #Convert #awk
1637 days ago
BioStar
@biostar
Enter newline at the end of the file $ sed -i -e '$a\' file #NewLine #Sed #Line #New
1367 days ago
BioStar
@biostar
#Multi-line fasta to #Single-line Fasta $ awk '/^>/ {if (NR>1) print ""; printf("%s\n", $0); next; } { printf("%s", $0) } END { printf("\n"); }' multi_line.fasta > single_line.fasta
110 days ago
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