Bioinformatics tools for telomere to telomere assembly !
...ased assembly and variant calling evaluation for improved consensus accuracy (Arang Rhie)● PanGenie – algorithm that leverages a pangenome reference built from haplotyp...1000 days ago
pggb: the pangenome graph builder
This pangenome graph construction pipeline renders a collection of sequences into a pangenome graph (in the variation graph...the interpretation, visualization, and reuse of pangenome variation graphs....1338 days ago
odgi: optimized dynamic genome/graph implementation
...se of such graphs in bioinformatic analyses. Careful encoding of graph entities allows odgi to efficiently compute and transform pangenomes with minimal overheads....831 days ago
Tools for bacterial whole genome annotation
...;This is the best way to get good quality annotation in a flash, which is particularly useful if you have loads of genomes or need to annotate a pangenome or metagenome. Note however t...2340 days ago
pggb: the pangenome graph builder
This pangenome graph construction pipeline renders a collection of sequences into a pangenome graph (in the variation graph model). Its goal is to build a graph that is locally directed and acyclic while preserving large-scale variation. Maintaining local linearity is important for the interpreta...Tags: pggb, pangenome, graph, builder
1338 days ago
Tags: PPanGGOLiN, Depicting, microbial, species, diversity, Partitioned, PanGenome, Graph, Linked, Neighbors
102 days ago