Results for "path-based"
Blogs
Five points for bioinformatics software/tools
In the bioinformatics sector we mostly spend time on computational analysis of huge amounts of data and try to make sense of it, biologically. But, most of the newbie bio...3719 days ago
List of bioinformatics workflow management tools !
Here are list of Workflow Managers BigDataScript – A cross-system scripting language for working with big data pipelines in computer systems of differe...1154 days ago
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Bookmarks
Well designed regular expression cheat sheet
In our computational biology work, we mostly play with DNA or AA string. For string based programming work this regular expression cheat sheet is really helpful. Keep it handy.3962 days ago
DAVI: Deep learning-based tool for alignment and single nucleotide variant identification
DAVI consists of models for both global and local alignment and for variant calling. We have evaluated the performance of DAVI against existing state-of-the-art tool sets...1158 days ago
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Files
Master Thesis: Trans-membrane topology prediction through Markov based decoders
Abstract: Background/Motivation: The dearth of structural information on alpha helical membrane protein (MPs) has hindered thus far the development of reliable knowled...3956 days ago
Evaluation of genome assembly software based on long reads
TGS technologies have been used to produce highly accurate de novo assemblies of hundreds of microbial genomes and highly contiguous reconstructions of many dozens of pla...1932 days ago
Discussion topics
Which are the best statistical programming languages to study for a bioinformatician?
In Bio-informatics based genome sequencing and predicting metabolic pathways research jobs I used Matlab, SAS, SPSS, R and several Bioconductor packages. M...3963 days ago
Pages
Bio++ : C Language libraries for your biological need
C has always been a language that never attempts to tie a programmer down - it allows for easy implementation, it comes with a genuinely useful standard library that can...3959 days ago
- I found several useful bioinformatics articles which exaplain, define and elaborate the bioinformatics in scientific way. Therefore, instead of writting it again I d...
3933 days ago
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Top-level pages
- "Bioinformatics is a science of biological predictions and analysis" -- Jitendra Narayan "The mathematical, statistical and computing methods that aim to solve biol...
3959 days ago
- Data mining, the extraction of hidden predictive information from large databases. Data mining is becoming an increasingly important tool to transform this data into info...
3958 days ago
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Wire posts
News
- This pdf based tutorial in good resource to understand the basic of Perl in a day http://ritg.med.harvard.edu/training/perl/RC_Perl_Intro.pdf
3932 days ago
Webinar: Wednesday 21 August 2013 at Noon EDT
This webinar will describe the use of combinatorial pooling to reconstruct gene sequences within BACs. Recent work in barley has shown that this level of sequence knowled...3931 days ago
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Opportunity posts
- van Noort Group is looking for PhD fellows We currently access an unprecedented knowledge on the basic components making up living systems. An ever growing number of n...
3960 days ago
- At TU Dresden, Faculty of Computer Science, the DFG Research Training Group GRK 1907 “Role-based Software Infrastructures for continuous-context-sensitive Systems” offers...
3960 days ago
- +120 more Opportunity posts
ResearchLabs posts
The Centre for Bioinformatics, Biomarker Discovery and Information-Based Medicine (CIBM)
The Centre for Bioinformatics, Biomarker Discovery and Information-Based Medicine (CIBM) is committed to shortening the process of obtaining novel discoveries to achieve...3960 days ago
- Infectious disease control needs to be made more “sustainable”. We need to reduce selective pressure on pathogens to evolve antibiotic resistance. We need to control infe...
3960 days ago
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Video
Spotlight on Genomics: Understanding Our Genes - A Step to Personalized Medicine
(Visit: http://www.uctv.tv/) Learn about the essential role of genomics in the development of stem cell based therapies. Craig Venter, president and founder of the J. Cra...3916 days ago
RNA interference (RNAi): by Nature Video
RNA interference (RNAi) is an important process, used by many different organisms to regulate the activity of genes. This animation explains how RNAi works and introduces...3905 days ago
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Bio-Scripts
- (JitMetaENV) ➜ JitMeta conda install grabseqs -c louiejtaylor -c bioconda -c conda-forge Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.
1229 days ago
- # To follow these instructions, we'll assume your system admins have already installed these essentials: # Debian/Ubuntu system admins should run: sudo apt-get install...
2156 days ago
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Tryst
Tryst with a Bioinformatician # Dr Altan Kara
Dr Altan Kara is a Bioinformatics specialist at the faculty of Gene Engineering and Biotechnology Institute at TUBITAK MAM Research Center. His research interest...2374 days ago
Groups
Web prgramming for biologist/bioinformatician
PHP is quite popular these days (in combination with mySQL (query and design db), CSS (for styling) and HTML) for web programming and online database management for publi...3648 days ago
Tags
LR_Gapcloser: a tiling path-based gap closer that uses long reads to complete genome assembly
LR_Gapcloser is a gap closing tool using long reads from studied species. The long reads could be downloaed from public read archive database (for instance, NCBI SRA database ) or be your own data. Then they are fragmented and aligned to scaffolds using BWA mem algorithm in BWA package. In the pa...Tags: LR_Gapcloser, tiling, path-based, gap, closer, long, reads, complete, genome, assembly
1463 days ago
Comments
Comment on "Sibelia: A comparative genomics tool"
Basic usage =========== In this manual it is assumed that "Sibelia" is properly installed and the directory with "Sibelia.py" is in your "PATH" environment variable or...1297 days ago
Comment on "Mugsy: multiple whole genome alignment tool"
Set up the environment bash source /path/to/install/mugsyenv.sh Run mugsy mugsy --directory /data/output --p...1297 days ago
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