Results for "phasing"
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...ialized Applications: De Novo Assembly Transcriptome analysis Base Modification Analysis Barcoding Data Analysis Tools Minor Variants and Phasing Analysis...2636 days ago
- ...kage that performs genotype calling, genotype phasing, imputation of ungenotyped ma...agle version 4.1 has a more accurate genotype phasing algorithm and a very fast and...model the parent-offspring relationships when phasing genotypes, please use ve...
2756 days ago
- IMPUTE2 is a computer program for phasing observed genotypes and imputing missing genotypes. Most peopl...zed and powerful options. If you are new to IMPUTE2, or indeed to phasing and imputation in general, we...
2756 days ago
DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
...sm analyses on large datasets. Among other features, the newly implemented methods allow for: (i) analyses on multiple data files; (ii) haplotype phasing; (iii) analyses on insertion/...2654 days ago
Scallop: reference-based transcriptome assembler for RNA-seq
...transcripts as well as lowly expressed transcripts. Scallop achieves this improvement through a novel algorithm that can be proved preserving all phasing paths from reads and paired-e...2198 days ago
Ranbow: a haplotype assembler for polyploid genomes
...assembly of the hexaploid sweet potato genome, which is highly heterozygous. Ranbow can also be applied to other polyploid genomes. After a first phasing, Ranbow utilizes the assemble...2174 days ago
WhatsHap: fast and accurate read-based phasing
WhatsHap is a software for phasing genomic variants using DNA sequen...ing reads, also called read-based phasing or haplotype assembly. It is...Hap: fast and accurate read-based phasing) Works well with Illumina, P... → AGAA) Pedigree phasing mode uses reads from related...2178 days ago
Merqury: reference-free quality and phasing assessment for genome assemblies
Often, genome assembly projects have illumina whole genome sequencing reads available for the assembled individual. The k-mer spectrum of this read set can be used for...1438 days ago
ALLHiC: Phasing and scaffolding polyploid genomes based on Hi-C data
The major problem of scaffolding polyploid genome is that Hi-C signals are frequently detected between allelic haplotypes and any existing stat of art Hi-C scaffolding...1972 days ago
HipSTR: Haplotype inference and phasing for Short Tandem Repeats
HipSTR was specifically developed to deal with these errors in the hopes of obtaining more robust STR genotypes. In particular, it accomplishes this by: Learnin...1894 days ago
