2814 days ago
2485 days ago
Taxoblast : Taxoblast is a pipeline to identify contamination in genomic sequence
...n genome sequencing strategies are highly sensitive to contamination making the detection of foreign DNA sequences an important part of analysis pipelines. Here we use Taxoblast, a sim...2353 days ago
AIRVF: a filtering toolbox for precise variant calling in Ion Torrent sequencing
.... Tests on sequencing data of standard reference material showed up to ∼98% reduction of false variants when combined to conventional public pipelines and ∼48% to the in-house...2324 days ago
DendroPy: a Python library for phylogenetic computing
...logenetics, a component of more complex multi-library phyloinformatic pipelines, or as a scripting “glue” that assembles and drives such pipelines. The primary home page for D...2202 days ago
npScarf: real-time scaffolder using SPAdes contigs and Nanopore sequencing reads
npScarf (jsa.np.npscarf) is a program that connect contigs from a draft genomes to generate sequences that are closer to finish. These pipelines can run on a single laptop for microbia...2153 days ago
2180 days ago
CGView - Circular Genome Viewer
...va package for generating high quality, zoomable maps of circular genomes. Its primary purpose is to serve as a component of sequence annotation pipelines, as a means of generating vis...2144 days ago
PureCN: copy number calling and SNV classification using targeted short read sequencing
...d clonality. PureCN is designed for targeted short read sequencing data, integrates well with standard somatic variant detection and copy number pipelines, and has support for tumor sa...2094 days ago
Scribl : HTML5 canvas genomics graphic library
Scribl is a javascript, Canvas-based graphics library that easily generates biological visuals of genomic regions, alignments, and assembly data. Scribl can also be used in conventional offline pipelines, since everything needed to generate charts can be contained in a single html file.2017 days ago