Results for "plotting"
Blogs
List of gene ontology software and tools
...hy. http://reducio.princeton.edu/GOLEM/ BGI Web Gene Ontology (WEGO) Annotation Plot (Beijing Genomics Institute) WEGO () is a useful tool for plotting GO annotation results. It has...3702 days ago
BBTools for bioinformatician !
...tput, or specify in1=/in2=/out1=/out2= if you want custom naming.----------------------------------------------------------------Readlength.sh Plotting the length distribution of re...2263 days ago
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Statistical for biological research
...ds' Points of Significance column on statistics explains many key statistical and experimental design concepts. Other resources include an online plotting tool and links to statistics...2732 days ago
- Simple ideogram plotting and annotation in R. Basic usage: Rscript Ideoplot.R --heatmap hm.bed --annotate annotations.bed --out ideogram.pdf -or- Rscript Ideoplot.R --annotate...
2630 days ago
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Pages
Bio++ : C Language libraries for your biological need
...nsforms...),A new library, Bio++ RAA (Remote Acnuc Access), allowing you to fetch public databases like GenBank, EMBL or SwissProt,Algorithms for plotting trees, with support for vecto...3940 days ago
Awesome perl frameworks, libraries and software - PART 2
...aoya/perl-thrift-server - Thrift server implementation for perl mtve/bitcoin-pl - BitCoin perl implementation moritz/tufte - SVG plotting library for Perl 6 mndrix/Fi...2486 days ago
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Top-level pages
Next generation sequencing in R or bioconductor environment
...ggbio: ggplot2 extension for genomics data (online manual) Gviz: Plotting data and annotation informati...ng genomic coordinates HilbertVis: Hilbert genome plots GenomeGraphs: Plotting genomic information from Ense...3617 days ago
Wire posts
News
- ...along side into a text file, allowing users to recreate the charts directly in the console. Adding and changing legends? Messing around with the plotting window settings? It is much e...
3544 days ago
Tags
Genome assembly stats plotting
A de novo genome assembly can be summarised b y a number of metrics, including: Overall assembly length Number of scaffolds/contigs Length of longest scaffold/contig Scaffold/contig N50 and N90Assembly base composition, in particular percentage GC and percentage Ns CEGMA complet...Tags: Genome, assembly, stats, plotting
2250 days ago
- An increasing number of studies are mapping protein binding and nucleotide modifications sites throughout the transcriptome. Often, these sites cluster in certain regions of the transcript, giving clues to their function. Hence, it is informative to summarize where in the transcript these sites o...
Tags: MetaPlotR, Perl, R, pipeline, plotting, metagenes, nucleotide, modifications, transcriptomic, sites
2000 days ago
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Comments
- ...c Filtering, Trimming, Error Removing and Quality Control for fastq data. dupRadar dupRadar. An R package which provides functions for plotting and analyzing the duplication...
2130 days ago
