Results for "polyploid"
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...before 60nt. A5-miseq assumes it is assembling homozygous haploid genomes. Use a different assembler for metagenomes and heterozygous diploid or polyploid organisms. Use a different as...2827 days ago
Ranbow: a haplotype assembler for polyploid genomes
Ranbow is a haplotype assembler for polyploid genomes. It has been developed for the haplotype assembly of th...me, which is highly heterozygous. Ranbow can also be applied to other polyploid genomes. After a first phasin...2175 days ago
- ...o use the latest versions VCFv4.1 or VCFv4.2. The VCFtools in general have been used mainly with diploid data, but the Perl tools aim to support polyploid data as well. Run any of the...
2108 days ago
ALLHiC: Phasing and scaffolding polyploid genomes based on Hi-C data
The major problem of scaffolding polyploid genome is that Hi-C signals are frequently detected between alleli...i-C scaffolding pipeline, called ALLHIC, specifically tailored to the polyploid genomes. ALLHIC pipeline cont...1973 days ago
homologizer: Phylogenetic phasing of gene copies into polyploid subgenomes
...escribes the usage of homologizer to phase gene copies into polyploid subgenomes. The tutorial is a...Rothfels. 2022. Homologizer: phylogenetic phasing of gene copies into polyploid subgenomes. bioRxiv ...347 days ago
