Results for "positions"
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The Bio.SeqLoc modules in seqloc are designed to represent positions and locations (ranges of positions) on sequences, particularly nucleotide sequences. My original motivation for writing these package...3429 days ago
Nemo – A stochastic, individual-base, genetically explicit simulation platform
A recombination map has been added for all multi-locus traits. The map positions (chromosomal) for neutral markers (e.g. SNPs) and loci under selection (QTLs, deleterious...2786 days ago
- ...sp;This is due to the different resolution that variants are reported from traditional cytogenetic coordinates down to the actual base pair positions. Furthermore, multiple r...
2786 days ago
- ...strand. When mismatches occur in the overlapping region, the base with the better quality score is chosen.The algorithm is as follows:1.Find the positions where the forward and reverse...
2673 days ago
- ...ntate) , visualize and design primers to close gaps on shotgun assembled contigs based on a reference sequence. It uses MUMmer to find alignment positions and identify syntenies of ass...
2648 days ago
Gblocks: eliminates poorly aligned positions and divergent regions of a DNA or protein alignment
Gblocks eliminates poorly aligned positions and divergent regions of a DNA or protein alignment so that it becomes more suitable for phylogenetic analysis. This server implements...2178 days ago
bpRNA: large-scale automated annotation and analysis of RNA secondary structure
...NAs, to yield an objective, precise, compact, unambiguous, easily-interpretable description of all loops, stems, and pseudoknots, along with the positions, sequence, and flanking base...2188 days ago
SeqMonk:A tool to visualise and analyse high throughput mapped sequence data
...ritten for use with mapped next generation sequence data but can in theory be used for any dataset which can be expressed as a series of genomic positions. It's main features are: I...2077 days ago
DnaSP: DNA Sequence Polymorphism, is a software package for the analysis of DNA polymorphisms
...measures of DNA sequence variation within and between populations in noncoding, synonymous or nonsynonymous sites, or in various sorts of codon positions), as well as linkage disequil...1270 days ago
- ...st a single character for the start of the next k-mer and so on. Effectively, this will create sequences that overlap in k-1 positions.
1005 days ago
