CGView - Circular Genome Viewer
...the web. Feature information and rendering options are supplied to the program using an XML file, a tab deli...legends, and footnotes. In addition to the default full view map, the program can generate a series of hype...2159 days ago
ASplice: a scalable and memory-efficient algorithm for de novo transcriptome assembly
...are developed so that computations can be performed on a computing cluster with moderate amount of physical memory. Availability – A software program that implements the algorithm...2147 days ago
Mulan: Multiple-sequence local alignment and visualization for studying function and evolution
...Mulan brings together several novel algorithms: the TBA multi-aligner program for rapid identification of local sequence conservation, and the multiTF program for detecting evolutionarily...2094 days ago
P_RNA_scaffolder: a fast and accurate genome scaffolder using paired-end RNA-sequencing reads
P_RNA_scaffolder is a novel scaffolding tool using Pair-end RNA-seq to scaffold genome fragments. The method is suitable for most genomes. The program could utilize Illumina Paired-en...2081 days ago
SeqMonk:A tool to visualise and analyse high throughput mapped sequence data
SeqMonk is a program to enable the visualisation and analysis of mapped sequence data. It was written for use with mapped next generation sequence data but can in theory be us...2077 days ago
Rebaler: program for conducting reference-based assemblies using long reads.
Rebaler is a program for conducting reference-based assemblies using long reads. It relies mainly on minimap2 for alignment and Racon for making consensus...2069 days ago
2066 days ago
MimicrEE2: Genome-wide forward simulations of Evolve and Resequencing studies
MimicrEE2, a multi-threaded Java program for genome-wide forward simulations of evolving populations. MimicrEE2 enables the convenient usage of available genomic resources, supports b...2059 days ago
GenomeThreader: Gene Prediction Software
...e structures via spliced alignments. GenomeThreader was motivated by disabling limitations in GeneSeqer, a popular gene prediction program which is widely used for plan...2054 days ago
2046 days ago