2357 days ago
FOGSAA: Fast Optimal Global Sequence Alignment Algorithm
...m. It is basically a branch and bound approach which starts branch expansion in a greedy way taking the symbols from the given pair of sequences (protein or nucleotide) and results in...2333 days ago
Foldit: Solve Puzzles for Science
Foldit is an online puzzle video game about protein folding. It is part of an experimental re...ve of Foldit is to fold the structures of selected proteins as perfectly as possible ht...2320 days ago
JPred4: A Protein Secondary Structure Prediction Server
JPred4 (http://www.compbio.dundee.ac.uk/jpred4) is the latest version of the popular JPred protein secondary structure prediction server which provides predictions by the JNet algorithm, one of the most accurate methods for secondary structure prediction.2312 days ago
Protein Subcellular Localization Prediction
Assigning subcellular localization to a protein is an important step towards elucidating its interaction partners, function, and potential role(s) in the cellular machinery. Computati...2250 days ago
PLAR: Pipeline for lncRNA annotation from RNA-seq data
...from other species identified by PLAR. Available here. Species Assembly Code Transcriptome lncRNAs Protein-coding Human hg...842 days ago
MMseqs2.0: ultra fast and sensitive protein search and clustering suite
...any sequence searching) is a software suite to search and cluster huge protein sequence sets. MMseqs2 is ope...lease cite: Steinegger M and Soeding J. MMseqs2 enables sensitive protein sequence searching for the an...2229 days ago
EvidentialGene: tr2aacds, mRNA Transcript Assembly Software
...eed gene prediction and assembly software, combining all evidence for genes, from expressed sequences, genome assembly sequences, related species protein sequences, and any other, to...2182 days ago
Gblocks: eliminates poorly aligned positions and divergent regions of a DNA or protein alignment
...;eliminates poorly aligned positions and divergent regions of a DNA or protein alignment so that it becomes...re an example output file showing the blocks selected from a protein alignment. Further informatio...2157 days ago
GLEAN: an unsupervised learning system to integrate disparate sources of gene structure evidence
GLEAN is an unsupervised learning system to integrate disparate sources of gene structure evidence (gene model predictions, EST/protein genomic sequence alignments, SAGE/peptide tags, etc) to produce a consensus gene prediction, without prior training.2157 days ago