Results for "pyrosequencing data"
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Source Code and Pseudo Code !!
An algorithm is a procedure for solving a problem in terms of the...endif 5. Larger example: NOTE: NEVER ANY DATA DECLARATIONS IN PSEUDOCODE...scussed ahead) in your pseudocode. Do not include data declarations in your pseudoco...2653 days ago
Quick next generation sequencing (NGS) terms definition
fragment size: the Illumina WGS protocol generates paired-end reads from both ends of l...refore the fragment size distribution can be learned empirically for each WGS data set separately.concordant rea...2516 days ago
Awesome perl frameworks, libraries and software - PART 1
A curated list of awesome Perl frameworks, l...nbsp;- Perl binding for Redis database pplu/aws-sdk-perl -...open source repository garu/Data-Printer - colored pretty...ver for the MySQL and MariaDB databases beide/Bootimg-scripts&n...plication that serves KeePass database entries on a web frontend...2483 days ago
- It is often necessary to import sample textbook data into R before you start worki...k = loadWorkbook("mydata.xls") > df ...ocumentation > mydata = read.spss("myfile...code samples above assume the data files are located in the R&nb...
2483 days ago
Phylogenetic & Molecular Genetics Terms and Definitions
analog -- A feature that appears similar in two taxa which have originated from two differen...of coding sequences, for discovery of new genes and (by reference to sequence data banks) for discovery of ident...2456 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantification from RNA-seq data (uses pseudoalignment for rap...of transcripts using RNA-seq data (uses k-mers) https://c...aplogroup classifier from NGS data (k-mer based) Software (Pyth...from unassembled raw sequence data from whole genome sequencing...2365 days ago
- When you have both Illumina and Nanopore data, then SPAdes remains a good o...quired for metagenomic sample data --rna this...bling Advanced options: --dataset <filename>...ead 1 and read 2 of the MiSeq data the nanopore data put the o...
2345 days ago
Single Cell RNAseq data analysis tutorial !!
A major breakthrough (replaced microarrays) in the...the useful links: Single Cell RNAseq data analysis Tutorial A step-by-...level analysis of single-cell RNA-seq data A step-by-step workflow for...models applied to single-cell RNA-seq data separate biological drivers f...2345 days ago
- RNA-sequencing (RNA-seq) has a wide variety of appli...iew all of the major steps in RNA-seq data analysis, including experimen...survey of best practices for RNA-seq data analysis RNA-seq workflow: g...EBI RNA-Seq exercise An open RNA-Seq data analysis pipeline tutorial wi...
2345 days ago
Tools for bacterial whole genome annotation
RAST – Web tool (upload cont...es the subsystems in the SEED database and provides detaile...apable of processing a larger data volume. NCBI's annotati...umbers to the user's sequence data by BLAST searches, respective...hine and supported by updated databases will enable biologists t...2326 days ago
