Results for "pyrosequencing data"
Bio-Scripts
Pack a perl program with their dependencies on Ubuntu !
#Follow steps to create your own executable ./web...ge libgetopt-argvfile-perl. (Reading database ... 193749 files and dire...sign, analysis, and interpretation of data for studies in public health...ing structural variants in sequencing data using genome-wide local assem...1511 days ago
Commands to install conda in Ubuntu !
jit@jit-HP-Pro-3335-MT:~/Downloads$ mkdir jittmp jit@jit-HP-Pro-...MENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BU SINESS IN...ml5lib-1.0.1-py37_0 ... installing: importlib_metadata-0.8-py37_0 ... installing: j...1511 days ago
- (base) jit@jit-HP-Pro-3335-MT:~/Downloads/testDock$ docker build -t autocontampr . Sending build context to Docker daemon 9.024MB Step 1/16 : FROM ubuntu:14.04 --...
1442 days ago
- #This method can be applied directly to FASTA or a FASTQ file, compressed or uncompressed files. Seqtk is a fast and lightweight tool for processing biological data (FASTA/FASTQ). if you have a...
1402 days ago
Sequence Ids conversion files !
ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/ Name Size Date Modified ARCHIVE/ 02/01/2020, 05:30:00...7 B 09/06/2011, 05:30:00 ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/gene2go.gz ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/gene2accession.gz ftp://ftp....1402 days ago
- (JitMetaENV) ➜ assembly conda install -c bioconda prokka Collecting package metadata (current_repodata.json): done Solving environm...le solve. Solving environment: failed with repodata from current_repodata.json, w...
1215 days ago
Download minikraken database !
(JitMetaENV) ➜ day3 curl -O ftp://ftp.ccb.jhu.edu/pub/data/kraken2_dbs/old/minikraken2_v2_8GB_201904.tgz %..._UPDATE/opts.k2d minikraken2_v2_8GB_201904_UPDATE/database100mers.kmer_distrib minikraken2_v2_8GB_201904_UPDATE/database150mers.kmer_distrib mini...1214 days ago
Perl script to check perl modules and download NCBI, BUSCO, Taonomy, Silva databases !
use strict; use warnings; use ExtUtils::In...em and download the mandatory database # BEGIN { my @impo...ile', 'Try::Tiny', 'Data::Dumper', 'File::Basenam...nt "\nDownloading third party database for Alienomics\n"; #In....arb-silva.de/fileadmin/silva_databases/release_138_1/Exports/SI...1160 days ago
- #use strict; use warnings; use ExtUtils::Installed...the system and download the mandatory database # BEGIN { my @impo...'Tie::File', 'Try::Tiny', 'Data::Dumper', 'File::Basenam...e print "\nDownloading third party database for Alienomics\n";...
1158 days ago
Perl script to check modules installed !
#use strict; use warnings; use ExtUtils::Installed; # # First, check if all the requir...', 'File::Copy', 'POSIX', 'Tie::File', 'Try::Tiny', 'Data::Dumper', 'File::Basenam...1155 days ago
