Nucleus: Python and C++ code for reading and writing genomics data.
Nucleus is a library of Python and C++ code designed to make it easy to read, write and analyze data in common genomics file formats like SAM and VCF. In addition, Nucleus enables painless integration with the TensorFlow machine learning framework, as anywhere a genomics file is consumed or produ...Tags: Nucleus, Python, C++, code, reading, writing, genomics
1548 days ago
Post Doc Computational Biology, Bioinformatics - Network Biology & Data Science, NGS (m/f/d)
https://www.jobvector.de/jobs-stellenangebote/biologie-life-sciences/forschung-entwicklung/post-doc-computational-biology-bioinformatics-network-biology-data-science-ngs-129867.html?suid=e522e9793b41817e52ac58d6963b94e2519920df Requirements Doctoral degree in Bioinformatics, Computational Bio...Tags: Bioinformatics, R, Python, NGS, Omics, single cell, inflammation, fibrosis
1535 days ago
Postdoctoral scientist genome analytics/ genome bioinformatics (m/f/*)
https://www.uksh.de/jobs/Stellenangebote-nr-20190570-p-8.html Your profile: Degree in bioinformatics, biostatistics, or equivalent Experience in the processing and analysis of large-scale genomics data using compute clusters / high-performance computing Strong competence in working in Unix/Li...Tags: NGS, Python, R, Perl, Linux, GWAS, EWAS
1534 days ago
JCVI:Python utility libraries on genome assembly, annotation and comparative genomics
Collection of Python libraries to parse bioinformatics files, or perform computation related to assembly, annotation, and comparative genomics. https://github.com/tanghaibao/jcvi More at https://github.com/tanghaibao/jcvi/wikiTags: JCVI, Python, utility, libraries, genome, assembly, annotation, comparative, genomics, synteny, plots
1504 days ago
Tags: Flanker, Python, mobile, genetic, elements, HGT, genome, genes
1156 days ago
Luigi: a Python package that helps you build complex pipelines of batch jobs.
Luigi is a Python (3.6, 3.7, 3.8, 3.9 tested) package that helps you build complex pipelines of batch jobs. It handles dependency resolution, workflow management, visualization, handling failures, command line integration, and much more. Run pip install luigi to install the latest stable version...Tags: Luigi, Python, package, build, complex, pipelines, batch, jobs
1040 days ago