2127 days ago
CANU genome assembly parameters !
...useGrid=false \ [other-options] \ read_file.fastq.gz A default Canu run produces usually high quality assembly, example of a comman...1939 days ago
50 IISC Raman Post Doctoral Fellowships
...ost-Doc program with 50 positions. The Institute invites applications for intensely motivated individuals with an established record of high quality research, for the positi...1593 days ago
Bioinformatics tools for telomere to telomere assembly !
...of long-read transcripts that can assess the quality of data and the preprocessing...genomic samples to cluster and generate high-quality consensus sequences from HiFi...nbsp;– workflow to rapidly produce high-quality de novo plant genomes (Luca E...985 days ago
Protocol for De novo Genome Assembly using Illumina Reads
...you have and what the standard is like. If required, raw data cleanup/quality trimming. Choose an adequate...sembly performance and determine the efficiency of the assembly. Read Quality Control:Check the qualiy with...1198 days ago
Ancient whole genome duplication (WGD) detection tools !
...uild Ks distribution wgd ksd --n_threads 80 Sspon_cds.out/Sspon.v20190103.cds.fasta.blast.tsv.mcl Sspon.v20190103.cds.fasta Step 3 : If the quality of the genome is good, then w...1149 days ago
Illumina based assembly pipeline steps !
...t annotation (SnpEff, SnpSift) Consensus assessment report (QUAST) Lineage analysis (Pangolin) Clade assignment, mutation calling and sequence quality checks (Nextclade) Individua...871 days ago
Useful Bioinformatics Analysis Tools !
...equence alignment designed especially for GPU. • Gudys, A., Deorowicz, S., QuickProbs 2: towards rapid construction of high-quality alignments of large protein f...857 days ago
List of comparative genomics resources !
...The Macaque Genome: Interactive Poster and Teaching Resource An interactive online poster presentation on the Macaque genome, including high-quality images, video clips, and Web...671 days ago
Common steps for reads mapping !
...h the mapper. Most mappers accept FASTQ or BAM files. Depending on the quality of the data, it may need to b...complete, the results should be evaluated. This includes assessing the quality of the mapping, such as the m...417 days ago