molinspiration: broad range of cheminformatics software tools supporting molecule manipulation
...ation of tautomers, molecule fragmentation, calculation of various molecular properties needed in QSAR, molecular modelling and drug design, high quality molecule depiction, molecular...1946 days ago
Roary: the Pan Genome Pipeline
...it can analyse datasets with thousands of samples, something which is computationally infeasible with existing methods, without compromising the quality of the results. 128 samples c...1944 days ago
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The Extensive de novo TE Annotator (EDTA)
The EDTA package was designed to filter out false discoveries in raw TE candidates and generate a high-quality non-redundant TE library for whole-genome TE annotations. Selection of i...1746 days ago
Π-cyc: A Reference-free SNP Discovery Application using Parallel Graph Search
...ur solution is to search the graph in multicores shared memory parallel mode using graph decomposition then use filtering method to generate good quality SNPs. https://arxiv.org/abs/...1573 days ago
Musket - a multistage k-mer spectrum based corrector
...spectrum approach and introduces three correction techniques in a multistage workflow. Our performance evaluation results, in terms of correction quality and de novo genome assembly m...1565 days ago
MEC: Contig Misassembly Correction
...e of MEC on scaffolding results, which shows that MEC can reduce misassemblies effectively and result in quantitative improvements in scaffolding quality. MEC is publicly available fo...1565 days ago
iSeqQC: a tool for expression-based quality control in RNA sequencing
iSeqQC, an expression-based QC tool that detects outliers either produced due to variable laboratory conditions or due to dissimilarity within a phenotypic group. iSeqQ...1554 days ago
LoFreq*: A sequence-quality aware, ultra-sensitive variant caller for NGS data
LoFreq* (i.e. LoFreq version 2) is a fast and sensitive variant-caller for inferring SNVs and indels from next-generation sequencing data. It makes full use of base-cal...1552 days ago