Results for "query"
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Comment on "Basic command-line to run BLAST"
BLAST compares a query sequence to a database of known sequences and identifies the most similar...lationships between different organisms. BLAST works by breaking down the query sequence into smaller segment...434 days ago
Comment on "Basic command-line to run BLAST"
...tabase of sequences to find those that match a query sequence. Here are the genera...hoose the program that is appropriate for your query and database. Prepare th...p penalties. Perform the search: Once the query sequence and parameters have...437 days ago
- ...stANI -h One to One. Compute ANI between single query and single reference genome: $ ./fastANI -q [QUERY_GENOME] -r [REFERENCE_GENOME]...a format. One to Many. Compute ANI between single query genome and multiple reference...
1115 days ago
- DeepConflation based CNN model is used to generate alignment of fasta file . Model try to match a query string in a referance genome to provide location of match. https://github.com/gguptaiitd/DeepConflation
1160 days ago
Comment on "List of Bioinformatics Vacancy, Jobs, Opportunity websites"
Bioinformatics jobs in USA at https://jobs.uncc.edu/postings/search?utf8=%E2%9C%93&query=bioinformatics&query_v0_posted_at_date=&2074=&commit=Search1756 days ago
Comment on "LAMSA: fast split read alignment with long approximate matches"
...m number of skeletons that are reserved in a cluster. [10] -R --max-reg [INT] Maximum allowed length of unaligned read part to trigger a bwt-based query. [300] -k --bwt-kmer [INT] Le...2136 days ago
- ...ining list of reference files, one per line -q <value>, --query <value> an input query file (fasta/fastq)[.gz] --ql...' or 'none' [default: map] 'map' computes best mappings for each query sequence 'one-to-one' compute...
2136 days ago
Comment on "Basic command-line to run BLAST"
...uences in 2.87095 seconds.urbe@urbo214b[Human_vs_Avaga_protein] blastp -query Adineta_vaga.v2.pep.fa -db mo..._protein.fa -dbtype prot urbe@urbo214b[Human_vs_Avaga_protein] blastp -query Adineta_vaga.v2.pep.fa -db hu...2258 days ago
Comment on "Run miniasm assembler on nanopore reads !"
...pass (crude) read selection <===[M::ma_hit_sub::130.468*1.00] 745887 query sequences remain after sub[M:...-pass (fine) read selection <===[M::ma_hit_sub::144.152*1.00] 743866 query sequences remain after sub[M:...2295 days ago
Comment on "BLAST+ updated !!!"
...filename] [-seqidlist filename] [-negative_gilist filename] [-entrez_query entrez_query] [-db_soft_mask filtering_alg..._value] [-use_index boolean] [-index_name string] [-lcase_masking] [-query_loc range] [-strand strand] [...2531 days ago
