Results for "rapid"
Bookmarks
DarkHorse: a method for genome-wide prediction of horizontal gene transfer
A new approach to rapid, genome-wide identification and ranking of horizontal transfer candidate proteins is presented. The method is quantitative, reproducible, and computatio...2512 days ago
Mulan: MUltiple sequence Local AligNment and conservation visualization tool
Mulan performs multiple (2 or more) sequence alignments with an efficient and rapid "full local" alignment strategy that ensures a recapitulation of evolutionary sequence rearrangeme...2484 days ago
LIBSVM -- A Library for Support Vector Machines
... interfaces. C# .NET code and CUDA extension is available. It's also included in some data mining environments: RapidMiner, PCP, and LION...2471 days ago
RITA: Rapid identification of high-confidence taxonomic assignments for metagenomic data
...are subjected to a series of downstream classification steps. This work has been accepted for publication: MacDonald NJ, Parks DH, and Beiko RG. Rapid identification of taxonomic a...2354 days ago
- ...cal and graphical summary of an annotated genome. We envisage its use during annotation jamborees, genome comparison and for use by developers for rapid feedback during annotation so...
1386 days ago
AliTV—interactive visualization of whole genome comparisons
...al feature annotations and phylo- genetic information are supported. The user-friendly, web-browser based and highly customizable interface allows rapid exploration and manipulation...2310 days ago
alienness : Rapid Detection of Candidate Horizontal Gene Transfers across the Tree of Life
Horizontal gene transfer (HGT) is the transmission of genes between organisms by other means than parental to offspring inheritance. While it is prevalent in prokaryot...2249 days ago
HISAT2: a fast and sensitive alignment program for mapping next-generation sequencing reads
...,000 indexes needed to cover the human population). These small indexes (called local indexes), combined with several alignment strategies, enable rapid and accurate alignment of seq...2192 days ago
Porechop: tool for finding and removing adapters from Oxford Nanopore reads
...sequence identity. Porechop also supports demultiplexing of Nanopore reads that were barcoded with the Native Barcoding Kit, PCR Barcoding Kit or Rapid Barcoding Kit.2171 days ago
- Manta calls structural variants (SVs) and indels from mapped paired-end sequencing reads. It is optimized for analysis of germline variation in small sets of individua...
2172 days ago
