Results for "raw"
Top-level pages
...nformatics component. The goal of sequencing projects, for example, is not to corroborate or refute a hypothesis, but to provide raw data for later analysis. Once the raw data are available, hypothese...3954 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...g SNPs without a reference sequence. Ratan et al, BMC Bioinformatics 11:130, 2010 PubMedCentral Microindel detection in short-read sequence data. Krawitz et al, Bioinformatics 26(6...3787 days ago
Next generation sequencing in R or bioconductor environment
...ntially expressed genes (DEGs) in count tables based on a model using the negative binomial distribution. It expects as input a data frame with the raw read counts per region/gene o...3632 days ago
Apps for Busy Bioinformatics Researchers !!!
...eGroove will create for you a unique melody intimately based on your 23andMe genome informations. The music in you. After uploading your 23andMe raw data onto your iPhone via iTu...3549 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...an be SOAP or SAM formats, users must also give raw reads in Fasta or Fastq Refe...ed of 2 modules (kissnp2 and kissreads) Input: raw NGS datasets; fasta, fastq, g...o single, de novo, somatic reads; requires that raw reads are aligned with BWA I...2916 days ago
- ...https://gist.githubusercontent.com/santhilalsubhash/1e7cca357e52a181dc25/raw/cfb803e07900a2baefbb6534f1299...https://gist.githubusercontent.com/santhilalsubhash/c7dec516e0338503a4b6/raw/de0af1a39f0005c4ce7321c5ae57f...
2113 days ago
- ...ignment software for aligning raw sequence reads to a reference...summarizes the alignment of a raw sequence read to the referenc...QNAME: unique identifier of a raw sequence read (also known as...he reference genome where the raw read aligns. SAM Flag: a sin...
2876 days ago
Genome Assembly Tools and Software - PART1 !!
...numbers REPdenovo – A tool to Construct Repeats directly from Raw Reads REPdenovo is desig...psembler is a targeted assembly software. It takes as input a set of NGS raw reads and a set of input sequ...2693 days ago
Awesome perl frameworks, libraries and software - PART 1
...g the old perl SDL binding on cpan.org yanick/Template-Mustache - Drawing Mustaches on Perl, for fun...logging Software in Perl, similar to blosxome or Jekyll jacquesg/p5-Git-Raw - Perl bindings to the G...2496 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...otyping of known SNV/SNP variants directly from raw NGS sequence reads by countin...Affymetrix's Genome-Wide Human SNP Array) from raw NGS reads (k-mer based) Soft...on Lighter Correction of sequencing errors in raw, whole genome sequencing read...2378 days ago
