Results for "read"
Users
Interests: Reading3956 days ago
- Interests: Reading Books
3366 days ago
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Blogs
Five unique traits of effective computational biologist
...because it looked interesting; and the great biological programmer also read about the BioPerl packages, g...lso defend your finding with scientific words. Thanks to all of you for reading.3953 days ago
Five points for bioinformatics software/tools
...ools/software is that they’re free to download the source code and read exactly what the program does...itionally, most of the functionality that you need in your analysis is already coded into the program. Need...3711 days ago
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Bookmarks
Comparison of Short Read De Novo Alignment Algorithms
Excellent article to introduce different sequencing methods along with tools for de novo assembly of sequencing reads and their relevant references. Title: Comparison of Short Read De Novo Alignment Algorithms Author: Nikhil Gopal3913 days ago
Next Generation Sequencing (NGS) Tutorials
...s DOI: 10.1093/bioinformatics/btr441 ngs_backbone: a pipeline for read cleaning, mapping and SNP cal...e-exome data http://www.biomedcentral.com/1471-2105/14/S7/S11 DDBJ read annotation pipeline: a cloud...3490 days ago
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Files
- Hmm .. Don't worry you read it right .. this is not pi but bi ... "life of Bioinformatician(BI)". Disclaimer: This cartoon is solely designed to create humour and fun, not to offend any PI, supervisor or student.
3909 days ago
- ...//github.com/BioInf-Wuerzburg/proovread/raw/master/util/blasr-1.3.1/b...ng "OPERA-LG_v2.0.5/bin/preprocess_reads.pl" and have the following e...Finding the SA coordinates of the reads using BWA aln...[Thu Jun 14...FALCON-Unzip-Scaff.bamMapping long-reads using blasr.../home/urbe/Too...
2154 days ago
Pages
Bio++ : C Language libraries for your biological need
...th Bio++. J Now the time has been change, the biological programmers are ready to use the C++ libraries of...ove spaces, tokenize, switch between upper/lower case, etc.Applications: read options from a file or comman...3951 days ago
- ...er VSNS publication - this time aimed at highschool students, but fun to read for everyone. Includes...t By Frank A. Bisby, Science , 289: 2309 (2000). Are you ready for the revolution? By...
3924 days ago
- +10 more Pages
Top-level pages
- ...and in such manner that from the outcome we can read a definite answer, "yes" or "...amming avoids recomputing solutions that have already been computed. - The ma...nu.edu.au/~jason/hmmlinks.html•http://www.breadfan.com/markov.html•http:...
3949 days ago
Best book Titles for Learning Bionformatics
...can add to our intellect more than reading a book. In books, we...es and other people’s lives. Reading can make us more intelligent, updated, imaginative. Without reading we wouldn’t know any...uman Molecular Genetics, Andrew P. Read, Tom Strachan 1999, BIOS Scie...3921 days ago
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Wire posts
News
High Density Sheep SNP Genotyping Chip released!!!
...validated with Illumina GoldenGate Genotyping Assays over 403 animals from 23 breeds. The remaining SNPs were derived from the draft ovine genome. Read more @ http://res.illumina.c...3900 days ago
Illumina reveals first dataset of long reads
...chnology , acquired by Illumina releases new service for long reads sequencing i.e., FastTrack Long Reads. Average read length is aro...You can also check following pages for publications on long reads and more: http://www.illumi...3911 days ago
- +22 more News
Opportunity posts
Project Assistant Position at JMI
...certificate/mark sheet) along with original documents. NoTA/DA will be paid. For any further information you may e-mail to: mihassan@jmLac.in Read more at http://jmi.ac.in/uplo...3526 days ago
Bioinformatician for a lab at the Weizmann Institute of Science, Israel
...biology, biochemistry, immunology, in-vivo models as well as systems biology and bioinformatics to study the biology of PTMs in health and disease. Read more here: http://yifatmerbl....3495 days ago
- +6 more Opportunity posts
ResearchLabs posts
- ...nd structure prediction are the main areas; and protein structure, where the group is working on methods for structure prediction from sequence. To read more about these topics, plea...
3873 days ago
- ...variety of SV discovery approaches including: (i) paired-end mapping (or read pair analysis) based on abnormally mapped pairs of clone ends; (ii) read-depth analysis, which detects...
2996 days ago
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Fun
Perl Poem: Parse it in both Perl and English!
...en (please, please); open yourself, wide;join (you, me),connect (us,together), tell me. do something if distressed; @dawn, dance;@evening, sing;read (books,$poems,stories) until...3922 days ago
You can't install David Brownlee ;-)
...sk cpan to install abs, and it return this message. jitendra@jitendra-Aspire-S3-391[parallelLastz] sudo cpan install abs [ 4:43AM]Going to read '/home/jitendra/.cpan/Metadat...1834 days ago
Video
Bioinformatics -- Understanding of living systems through information science
...organisms, DNA contains genetic information, and this is called the genome. But the amount of information involved is huge, so recently, it's been read using next-generation sequenc...3920 days ago
The Story of You: ENCODE and the human genome
...it's used to make different types of cells and different people. The ENCODE project, as it's called, is the latest chapter in the story of you. To read the ENCODE research papers an...3910 days ago
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Bio-Scripts
Python script to download covid genome !
...mplete": nm = x['accession'] print("downloading", nm) dna = Entrez.efetch(db='nucleotide',id=nm, rettype = 'fasta', retmode= 'text').read().split("\n")[1:] allseq...1139 days ago
R script to visualize fastANI core-genome comparison
...arguments query_fasta=commandArgs(TRUE)[1] subject_fasta=commandArgs(TRUE)[2] fastANI_visual_file=commandArgs(TRUE)[3] library(genoPlotR) #Read fastANI output comparison...1104 days ago
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Tryst
Tryst with a Bioinformatician # Dr Altan Kara
...the articles with the PMID IDs; PMID: 27378293 and PMID: 26384938 can be read. What's your all-time fa...nd aim? With the increasing amount of data in databases, there is already a massive need for effective...2365 days ago
Tags
BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
BBSplit internally uses BBMap to map reads to multiple genomes at once, and determine which genome they match best. This is different than with ordinary mapping. If a genome (say, human) contains an exact repeat somewhere, reads mapping to it will be mapped ambiguously. But if you want to determi...Tags: BBSplit, Read, Binning, Tool, Metagenomes, Contaminated, Libraries
2317 days ago
- Short Read Simulators With the popularity of next-generation sequencing (NGS) technologies, many NGS read simulators have been developed. Currently, many of the popular short read simulators are designed to simulate reads mimicking many Illumina, 454 and SOLiD platforms. Listed below are some po...
Tags: Read, Simulators
586 days ago
Comments
Comment on "A quick guide to Phred scaling"
...r representing the quality scores of sequencing reads. It is used to quantify the...y of an error in each base call in a sequencing read. Here is a quick guide to Phr...is a common format used for storing sequencing reads. Each quality score is repre...419 days ago
Comment on "Short-read assembly using Spades !"
...pular software tool for short-read assembly. Here are the genera...ortant to ensure that the raw reads are of high quality and do n...o output_directory -1 forward_reads.fastq -2 reverse_reads.fastq...e the general steps for short-read assembly using SPAdes. Howeve...419 days ago
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