Results for "read depth"
Blogs
Protocol for De novo Genome Assembly using Illumina Reads
In this protocol, we address and describe the de novo assembly m...to millions of tiny parts and read on a sequencing computer in a...equencing system used, these "reads" range from 20 to 1000 nucle...ctious diseases. Raw NGS dataReads can be saved as a Fasta file...A significant range of short-read...1206 days ago
Run bash script in Perl program !
BioPerl is a compilation of Perl modules that can be used to build bioinformatics-rela...can also be used with or without the shell. You can read about it more in the document...d to Perl script: For further information, you can read...639 days ago
Innovative blog and portfolio website!
Do you ever feel overwhelmed or frightened by browsing through someone else's beautiful, responsive portfolio website links and wishing you could create one for yourself?So there you have it!Read...1050 days ago
Illumina based assembly pipeline steps !
...-sequenced FastQ files (cat) Read QC (FastQC) Adapter trimming (fastp) Removal of host reads (Kraken 2; optional) Varian...mplicon data only) Duplicate read marking (picard; optional) A...QC and visualisation for raw read, alignment, assembly and varia...879 days ago
Useful Bioinformatics Analysis Tools !
CoMeta Classificier of reads from metagenomic sequencing experiments. &...h;234, DSRC Compressor of sequencing reads. • Roguski,...Experimental compressor of sequencing reads. • Grabowsk...NE, 2014; 9(2):e88901, RECKONER Read...865 days ago
Online resources on must-read papers in evolutionary biology, for a literature club
1. *Nick Barton:* - The textbook "Evolution" by Nick Barton, with resources f...ig et al. 2013. Genetic incompatibilities are widespread within species. Nature. 2...link to 'papers every evolutionary biologist should read'...679 days ago
Must read paper and books in evolution biology !
1. *Nick Barton:* - The textbook "Evolution" by Nick Barton, with resources f...ig et al. 2013. Genetic incompatibilities are widespread within species. Nature. 2...link to 'papers every evolutionary biologist should read'...579 days ago
Interesting Bioinformatics Resources !
1. a reproducible workflow. https://www.youtube.com/watch?v=s3JldKoA0zw This two minute video will chang...rnals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.100042 A must read...543 days ago
- DeepMind’s artificial intelligence system AlphaFold2, predicts the 3D structure of a protein based on its am...uence. It looks to be a 50-year-old answer to the problem of protein folding.To read...
540 days ago
Common steps for reads mapping !
Mapping reads to a reference genome is an ess...al steps to follow for mapping reads to a genome: Choose a read mapper: There are many read mappers available, such as BW...to quickly find matches to the reads. Most mappers have their own...ing rate, the number of mapped reads...425 days ago
