Tools to detect synteny blocks regions among multiple genomes
...gions have mostly been preserved by genome rearrangements, and so synteny blocks from t.../). The finding indicates conservation and rearrangements of certain evolutionary impor...in one another or duplicated due to micro-rearrangements. SyntenyView ( http://www.cb...2625 days ago
Structural variation: the hidden genomic treasure
...volution and should not be neglected when studying the genetics of adaptation and speciation. SVs were classically defined as chromosomal rearrangements larger than 1kb, but due to a...2718 days ago
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Genome Assembly Tools and Software - PART1 !!
...t computes de novo genome assemblies with next-generation sequencing data. CAR – Contig Assembly of Prokaryotic Draft Genomes Using Rearrangements CAR is an efficient and mo...2701 days ago
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Bioinformatics -- Understanding of living systems through information science
...es of life. As an organism evolves, its genome sequence changes through sudden mutations. Additionally, at the genome level, mutations called rearrangements, such as inversions, transpos...3932 days ago
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SMASH: An alignment-free tool to find and visualise rearrangements between pairs of DNA sequences
SMASH is a completely alignment-free method to find and visualise rearrangements between pairs of DNA sequences. The detection is based on relative compression, namely using a FCM, also known as Markov model, of high context order (typically 20). The method has been approached with a tool (a...Tags: SMASH, alignment-free, tool, find, visualise, rearrangements, pairs, DNA, sequences
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Tags: AccessSyRI, finding, genomic, rearrangements, sequence, differences, whole-genome, assemblies
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Comment on "Sibelia: A comparative genomics tool"
...oice, but if you do not want to lose information about small-scale rearrangements, use "fine". See also secti...r blocks and better coverage, while "fine" can capture small-scale rearrangements, for example, inversions of...1300 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
Align Synteny - Beginning from completed or draft genomes, find shared syntenic regions and align them quickly while accounting for inversions, rearrangements, and duplications. http://www2.decipher.codes/AlignSynteny.html1989 days ago