Results for "rearrangements"
Blogs
Tools to detect synteny blocks regions among multiple genomes
...gions have mostly been preserved by genome rearrangements, and so synteny blocks from t.../). The finding indicates conservation and rearrangements of certain evolutionary impor...in one another or duplicated due to micro-rearrangements. SyntenyView ( http://www.cb...2608 days ago
Structural variation: the hidden genomic treasure
...volution and should not be neglected when studying the genetics of adaptation and speciation. SVs were classically defined as chromosomal rearrangements larger than 1kb, but due to a...2701 days ago
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Bookmarks
- ...d protein sequences, predicting genes, finding regulatory motifs, analyzing gene expression, constructing evolutionary trees, analyzing genome rearrangements, and identifying proteins. P...
3943 days ago
- This software is designed to identify both simple and complex rearrangements from paired-end sequencing data. Users could ran it easily by just alling SVelter.py with proper par...
2986 days ago
- +22 more Bookmarks
Top-level pages
- ...diate region is not. Particularly useful for identifying structural rearrangements, including gene fusions. Phr...ngle nucleotide polymorphisms, insertions, deletions and structural rearrangements. See also BCF format. NextGe...
2867 days ago
Genome Assembly Tools and Software - PART1 !!
...t computes de novo genome assemblies with next-generation sequencing data. CAR – Contig Assembly of Prokaryotic Draft Genomes Using Rearrangements CAR is an efficient and mo...2684 days ago
Wire posts
ResearchLabs posts
- ...t, which our group largely focuses on, is to detect the "essential" similarity in proteins whose non-critical sections have experienced random rearrangements during evolution. In such cas...
3883 days ago
- ...n Bioinformatics and Computational Biology. Current research interests include next-generation DNA sequencing, structural variation, genome rearrangements in cancer and evolution, and...
3226 days ago
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Video
Bioinformatics -- Understanding of living systems through information science
...es of life. As an organism evolves, its genome sequence changes through sudden mutations. Additionally, at the genome level, mutations called rearrangements, such as inversions, transpos...3915 days ago
- ...ar genetic phenomena associated with tumorigenesis and tumor progression. We find some very striking similarities, including recurring genomic rearrangements, alterations of the regulatio...
3871 days ago
- +1 more Video
Groups
...d protein sequences, predicting genes, finding regulatory motifs, analyzing gene expression, constructing evolutionary trees, analyzing genome rearrangements, and identifying proteins.3900 days ago
Tags
SMASH: An alignment-free tool to find and visualise rearrangements between pairs of DNA sequences
SMASH is a completely alignment-free method to find and visualise rearrangements between pairs of DNA sequences. The detection is based on relative compression, namely using a FCM, also known as Markov model, of high context order (typically 20). The method has been approached with a tool (a...Tags: SMASH, alignment-free, tool, find, visualise, rearrangements, pairs, DNA, sequences
2325 days ago
- AccessSyRI: finding genomic rearrangements andlocal sequence differences from whole-genome assemblies SyRI, a pairwise whole-genome comparison tool for chromosome-level assemblies. SyRI starts by finding rearranged regions and then searches for differences in the sequences, which are distinguish...
Tags: AccessSyRI, finding, genomic, rearrangements, sequence, differences, whole-genome, assemblies
1553 days ago
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Comments
Comment on "Sibelia: A comparative genomics tool"
...oice, but if you do not want to lose information about small-scale rearrangements, use "fine". See also secti...r blocks and better coverage, while "fine" can capture small-scale rearrangements, for example, inversions of...1283 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
Align Synteny - Beginning from completed or draft genomes, find shared syntenic regions and align them quickly while accounting for inversions, rearrangements, and duplications. http://www2.decipher.codes/AlignSynteny.html1971 days ago
