Results for "regions"
Bio-Scripts
Perl script to find palindromic regions in DNA sequences
use strict; use warnings; my $pp = qr/(?: (\w) (?1) \g{-1} | \w? )/ix; my $filename = $ARGV[0]; open(my $fh, '2160 days ago
Perl script to find coding regions in DNA sequences
...hould be obtained with the two sequences: high values (positive) for coding protein sequences and low values (zero or even negative) for intronic regions. exon.fa >HUMHBB.2ex...2161 days ago
- ...of structural variations from reads FindBreakpointEvidenceSpark (BETA Tool) (Internal) Produces local assemblies of genomic regions that may harbor structural va...
2081 days ago
Perl script to break the contigs by 'N'
...$seq; #now all bases are in uppercase #Searches for NNNNN regions (scaffold breaks) #Hash nregions stores a hash from the contig...inNlen) { my $end=$i; my $ini=$end-$n+1; push(@regions,"$ini $end"); } $n=0;...2069 days ago
Bash script to extract intronic fragments !
#To obtain introns, we simply need the gene and exonic coordinates; #by subtracting the exonic regions from the genic region, we have the intronic region. gunzip -c genome_file.g...1371 days ago
