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Results for "remove"

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• • Jit@jit.aber

  

  Remove conda environment completely $ conda env remove -n env_name #Remove #Conda #Environment

  Tags: Remove, Conda, Environment

  1434 days ago

• • Jit@jit.aber

  

  Remove duplicated lines from text file. $ awk '!seen[$0]++' allIds #duplicate #lines #remove #awk

  Tags: duplicate, lines, remove, awk

  2453 days ago

• • Archana Malhotra@archana

  

  How to remove a fasta sequence by header from a multifasta file ?

  >AAAAGTCGTGC >BBBAGTGCGGGTG Remove AAA and keep only BBB

  Tags: remove, delete, multifasta, fasta, header

  2363 days ago

• • Radha Agarkar@radhaagarkar

  

  Remove the fasta with zero size: awk 'BEGIN {RS = ">" ; FS = "\n" ; ORS = ""} $2 {print ">"$0}' input.fas > output.fas #fasta #remove

  Tags: fasta, remove

  2338 days ago

• • Surabhi Chaudhary@surabhi

  

  Remove the unwanted characters from Fasta file: sed -e '/^[^>]/s/[^ATGCatgc]/N/g' infile.fa #sed #unwanted #illegal #remove #correct #fasta #linux

  Tags: sed, unwanted, illegal, remove, correct, fasta, linux

  2338 days ago

• • Jit@jit.aber

  

  awk 'BEGIN {RS = ">" ; FS = "\n" ; ORS = ""} {if ($2) print ">"$0}' all_p_ctg.fa > all_p_ctg_CORRECTED.fa #remove #empty #clean #fasta

  Tags: remove, empty, clean, fasta

  2327 days ago

• • Rahul Nayak@rahul

  

  Porechop: tool for finding and removing adapters from Oxford Nanopore reads

  Porechop is a tool for finding and removing adapters from Oxford Nanopore reads. Adapters on the ends of reads are trimmed off, and when a read has an adapter in its middle, it is treated as chimeric and chopped into separate reads. Porechop performs thorough alignments to effectively find adapte...

  Tags: Porechop, tool, finding, remove, adapters, Oxford, Nanopore, reads, ONT, NGS, Long

  2161 days ago

• • Jit@jit.aber

  

  HapSolo: An optimization approach for removing secondary haplotigs during diploid genome assembly and scaffolding.

  Despite marked recent improvements in long-read sequencing technology, the assembly of diploid genomes remains a difficult task. A major obstacle is distinguishing between alternative contigs that represent highly heterozygous regions. If primary and secondary contigs are not properly identified,...

  Tags: HapSolo, optimization, approach, remove, secondary, haplotigs, diploid, genome, assembly, scaffolding

  1280 days ago

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