1194 days ago
Five points for bioinformatics software/tools
...k, because the software is not available to everyone and your data can’t be validated. Moreover, there is very less chances that anyone will repeat your work or love to do simil...3762 days ago
Bioinformatics PhDs - Cover Letter
...V, and represents your best opportunity to communicate directly with your target audience prior to an interview.The cover letter should not simply repeat the information contained in...3420 days ago
SATSUMA : Highly sensitive whole-genome synteny alignments.
...rientation of features, such as protein coding genes, non-coding genes, or neutral sequences. Satsuma does not require any pre-processing, such as repeat masking, since it will automa...2968 days ago
Bioinformatics tools and software
...U sequences and improved diversity measures. UCHIME >Chimeric sequence detection. PILER >De novo genome repeat finder. PILER-CR >Detection of CRISPR repeats in bacterial genomes. Q...2915 days ago
2205 days ago
Genome Assembly Tools and Software - PART2 !!
...WGS Sequence AssemblerRePS (Repeat-masked Phrap with scaffolding...explicitly identifies exact kmer repeats from the shotgun data and re...e assembly reduces the numbers of repeats in the assembly, allows more..., when available, to retrieve the repeated areas between contigs. Luc...2740 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...ing errors in a mixed set of reads. Salmela, Bioinformatics 26(10):1284, 2010. Full Text [includes error correction of SOLiD reads in colorspace] Repeat-aware modeling and correction...3833 days ago
Commercial and public next-gen-seq (NGS) software
...a) back to a genome of any size. It seeks to align reads from nonunique repeats using statistics. From autho...fficient suffix tree library, seed-and-extend alignment, SNP detection, repeat detection, and visualization...3573 days ago
SPADes team announce new version SPADes v3.15
...Important improvements and corrections to the metaplasmid pipeline; - Multiple performance improvements in procedures for simplification and repeat resolving. Please, consi...1260 days ago
Install Parrot Virtual Machine !
...::perldoc - Is perldoc installed.................................no. auto::coverage - Are coverage analysis tools installed...Negative repeat count does nothing at lib/Par...1591 days ago
Pack a perl program with their dependencies on Ubuntu !
#Follow steps to create your own executable ./web jit@jit-HP-Pro-3335-MT:~/Downloads/autoConTAMPR/bin$ sudo apt install libpar-packer-perl Reading package lists......1565 days ago
Rectangle Graph for Repeat Resolution in Genome Assembly
Ultimate tool for resolving repeats in genome assemblies. Though the specific implementation of the idea of the rectangle graph approach is already included into the current SPAdes distribution, we're also releasing the Rectangle Graph Module (RGM) as the separate code which can be run inde...Tags: Rectangle, Graph, Repeat, Resolution, Genome, Assembly
2374 days ago