Results for "repeat content"

Bio-Scripts

  • Count GC Content in nucleotide sequence with Perl

    #!/usr/bin/perl -w ### Usage: get_gc_content.pl...----------------------- print OUT "ID\t% GCContent\tTotal Count\tG Count\tC Coun...; close(OUT); sub usage { $0 get_gc_content.pl } sub process_it...

    2900 days ago

  • Fill up the form and blast with perl

    use WWW::Mechanize; use strict; use warnings; my $mech = WWW::Mechanize->new; m...etSet' => 'ATH1_pep', 'QueryText' => $sequence, }, ); print $mech->content;

    2319 days ago

  • Install Parrot Virtual Machine !

    #Parrot is a virtual machine designed to efficiently compile and execute bytecode for dynamic languages jit@jit-......no. auto::coverage - Are coverage analysis tools installed...Negative repeat...

    1531 days ago

  • Downloading GATK !

    jitendra@jitendra-UNLOCK-INSTALL[SNP] wget...gnedHeaders=host&actor_id=0&response-content-disposition=attachment%3B%20filename%3Dgatk-4.0.2.1.zip&response-content-type=application%2Foctet-stre...TA Tool) Annotates intervals with GC content CallCopyRatioSegments...

    2069 days ago

  • Install HTSLIB on Ubuntu !

    ...&X-Amz-SignedHeaders=host&actor_id=0&response-content-disposition=attachment%3B%20filename%3Dhtslib-1.9.tar.bz2&response-content-type=application%2Foctet-stre...slib-1.9/test/xx#pair.sam htslib-1.9/test/xx#repeated.sam htslib-1.9/test/xx#rg.s...

    2013 days ago

  • Installing ggplot2 and its dependencies on Ubuntu !

    ...ntrib/ellipsis_0.3.0.tar.gz' Content type 'application/x-gzip' len...c/contrib/glue_1.3.1.tar.gz' Content type 'application/x-gzip' len...c/contrib/plyr_1.8.5.tar.gz' Content type 'application/x-gzip' len...contrib/gtable_0.3.0.tar.gz' Content type 'application/x-gzip' len...

    1544 days ago

  • Perl script to reads and extract webpage contents !

    use 5.010; use strict; use warnings; use WWW::Mechanize; my ($url) = @ARGV; die "Usage: $0 URL\n" if not $url; my $w = WWW::Mechanize->new; $w->get($url); say $w->content; #Run #jit@jit-HP-Pro-3335-MT:~/Downloads/testDock$ perl web.pl https://bioinformaticsonline.com

    1507 days ago

  • Pack a perl program with their dependencies on Ubuntu !

    #Follow steps to create your own executable ./web jit@jit-HP-Pro-3335-MT:~/Downloa...rmaticsonline.com/snippets/view/41440/perl-script-to-reads-and-extract-webpage-contents jit@jit-HP-Pro-3335-MT:~/...

    1505 days ago

  • Perl script to check perl modules and download NCBI, BUSCO, Taonomy, Silva databases !

    use strict; use warnings; use ExtUtils::Installed; use...arseResult { system ($_[0]); } __END__ my $content = get("ftp://ftp.ncbi.nlm.nih....tar.gz"); die "Couldn't get it!" unless defined $content; if (is_success(get("$cont...

    1154 days ago

  • Plugin skeleton for ELGG !

    The following files for plugin example would go in /mod/example/ actions/ exa...owner.php widgets/ example_widget/ content.php edit.php...

    832 days ago