Count GC Content in nucleotide sequence with Perl
#!/usr/bin/perl -w ### Usage: get_gc_content.pl...----------------------- print OUT "ID\t% GCContent\tTotal Count\tG Count\tC Coun...; close(OUT); sub usage { $0 get_gc_content.pl } sub process_it...2900 days ago
Fill up the form and blast with perl
use WWW::Mechanize; use strict; use warnings; my $mech = WWW::Mechanize->new; m...etSet' => 'ATH1_pep', 'QueryText' => $sequence, }, ); print $mech->content;2319 days ago
Install Parrot Virtual Machine !
#Parrot is a virtual machine designed to efficiently compile and execute bytecode for dynamic languages jit@jit-......no. auto::coverage - Are coverage analysis tools installed...Negative repeat...1531 days ago
2069 days ago
2013 days ago
Installing ggplot2 and its dependencies on Ubuntu !
...ntrib/ellipsis_0.3.0.tar.gz' Content type 'application/x-gzip' len...c/contrib/glue_1.3.1.tar.gz' Content type 'application/x-gzip' len...c/contrib/plyr_1.8.5.tar.gz' Content type 'application/x-gzip' len...contrib/gtable_0.3.0.tar.gz' Content type 'application/x-gzip' len...1544 days ago
Perl script to reads and extract webpage contents !
use 5.010; use strict; use warnings; use WWW::Mechanize; my ($url) = @ARGV; die "Usage: $0 URL\n" if not $url; my $w = WWW::Mechanize->new; $w->get($url); say $w->content; #Run #jit@jit-HP-Pro-3335-MT:~/Downloads/testDock$ perl web.pl https://bioinformaticsonline.com1507 days ago
Pack a perl program with their dependencies on Ubuntu !
#Follow steps to create your own executable ./web jit@jit-HP-Pro-3335-MT:~/Downloa...rmaticsonline.com/snippets/view/41440/perl-script-to-reads-and-extract-webpage-contents jit@jit-HP-Pro-3335-MT:~/...1505 days ago
Perl script to check perl modules and download NCBI, BUSCO, Taonomy, Silva databases !
use strict; use warnings; use ExtUtils::Installed; use...arseResult { system ($_[0]); } __END__ my $content = get("ftp://ftp.ncbi.nlm.nih....tar.gz"); die "Couldn't get it!" unless defined $content; if (is_success(get("$cont...1154 days ago
832 days ago