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Results for "rna"

Bio-Scripts

• • Nishi Singh@nishi

  

  For a given DNA sequence find its RNA transcript, find its reverse complement and check if the reverse complement contains a start codon

  #!/usr/bin/perl use strict; use warnings; my $DNA = "GATTACACAT"; #transcribe DNA to RNA - T changes to U my $RNA = $DNA; $RNA =~ s/T/U/g; print "RNA sequence is $RNA\n"; #find the...

  2925 days ago

• • Neelam Jha@neelam

  

  Perl script introduces control structures, arrays and hashes.

  ...use strict; use warnings; my @first_array = ('DNA', 'ATGCGTGC', 5, 'RNA', 'AUGC'); print $first_arra...# Control Loop: for for (my $i=0; $i 'ATCGATGCT', 'RNA' => 'AUGC',...

  2871 days ago

• • Rahul Nayak@rahul

  

  Biological Sequence handling with Perl !

  ...nicalize($sequence); $self->{'type'} = $type || ($sequence=~/u/i ? 'RNA' : 'DNA'); } return $se..._[0]); my $seq = $self->{'data'}; return $seq unless $self->is_RNA; $seq=~tr/T/U/; ret...

  2190 days ago

• • Jit@jit.aber

  

  Running Trinity on RNA-seq !

  ➜ trinityrnaseq-Trinity-v2.6.6 git:(master...CMD: /home/urbe/Tools/trinityrnaseq-Trinity-v2.6.6/util/..//ut...touch /home/urbe/Tools/trinityrnaseq-Trinity-v2.6.6/trinity_out...ir -p /home/urbe/Tools/trinityrnaseq-Trinity-v2.6.6/trinity_out...ir -p /home/urbe/Tools/trinityrnaseq-Trinity-v2.6.6/trinity_out...

  2136 days ago

• • Surabhi Chaudhary@surabhi

  

  Download with Snakemake !

  ...a list we can use below SAMPLES=sample_links.keys() # download yeast rna-seq data from Schurch et al, 2016 study rule download_all: input: expand("rnaseq/raw_data/{sample}.fq.gz",...

  1525 days ago

• • Jit@jit.aber

  

  Downloading GATK !

  ...g the -Djava.io.tmpdir= option to select an alternate temp location. USAGE:...(BETA Tool) Collects reference and alternate allele counts at specified...tsFromContigAlignmentsSAMSpark (BETA Tool) (Internal) Examines aligned contigs fr...

  2084 days ago