Barrnap: Bacterial ribosomal RNA predictor
Barrnap predicts the location of ribosomal RNA genes in genomes. It supports bacteria (5S,23S,16S), archaea (5S,5.8S,23S,16S), mitochondria (12S,16S) and eukaryotes (5S...2549 days ago
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Ensembl comparative genomics resources
The Ensembl comparative genomics resources are one such reference set that facilitates comprehensive and reproducible analysis of chordate genome data. Ensembl comput...2988 days ago
RNA-Seq De novo Assembly Using Trinity
...nstruction of transcriptomes from RNA-seq data. Trinity combines three...ially to process large volumes of RNA-seq reads. Trinity partitions the...e so: Inchworm assembles the RNA-seq data into the unique sequence...installation directory. Assemble RNA-Seq data like so: Trinity --seq...2964 days ago
HOMER: Software for motif discovery and next-gen sequencing analysis
...ating SAM/BAM alignment files Visualizing data in a genome browser RNA-Seq De novo transcript discove...R/Bioconductor Clustering of large expression datasets (microarray or RNA-Seq) Microarray Basic analy...2930 days ago
RASTtk : algorithm for building custom annotation pipelines and annotating batches of genomes
The RAST (Rapid Annotation using Subsystem Technology) annotation engine was built in 2008 to annotate bacterial and archaeal genomes. It works by offering a standard s...2929 days ago
YASS :: genomic similarity search tool
YASS is a genomic similarity search tool, for nucleic (DNA/RNA) sequences in fasta or plain text format (it produces local pairwise alignments). Like most of the heuris...2924 days ago
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