BBTools for bioinformatician !
...meters; you can get the same sensitivity as BBMap by adding the flags "minid=0.76 maxindel=16k minhits=1". With those parameters it is extremely sensitive.NOTE: 2 BBSplit has diff...2268 days ago
Useful Bioinformatics Analysis Tools !
...nbsp;2020; (): Whisper Experimental mapper of whole genome sequencing data. • Deorowicz, S., Gudys, A., Whisper 2: indel-sensitive short read mapping, bioR...861 days ago
Public Databases for Bioinformatics !
...r 24 intel cores 256GB RAM 500GB of SSD storage 36TB RAID6 local storage 4 Intel Phi's (space for 4 more GPU's) durga: Montgomery and sensitive data 24 intel cores 256GB R...1137 days ago
Bioinformatics software for biologists in the genomics era
...l the needs of biologists to analyze large datasets by using sophisticated computational methods. We argue that the design principles need to be sensitive to the reality that comparati...3784 days ago
Awesome perl frameworks, libraries and software - PART 3
...a Perl module which gives you frequency (and optionally geolocation)-sensitive autocomplete suggestions base...AN clients miki/Algorithm-LSH - perl implementation of Locality Sensitive Hashing kimmel/basic-perl-te...2492 days ago
Bioinformatics in Africa: Part5 - Nigeria
...enome analysis of various species of Plasmodium and the comparison of chloroquine sensitive and chloroquine&nbs...1181 days ago
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Commercial and public next-gen-seq (NGS) software
...icted binding sites. MACS also uses a dynamic Poisson distribution to effectively capture local biases in the genome sequence, allowing for more sensitive and robust prediction. Writte...3516 days ago
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Comment on "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads"
...e@urbo214b[genome] graphmap align -h []GraphMap - A very accurate and sensitive long-read, high error-rate se...hor -w normal --overlapper --evalue 1e0 --ambiguity 0.50 --secondary' sensitive - Equivalent to: '--freq-perc...2290 days ago
Comment on "Commercial and public next-gen-seq (NGS) software"
...oom/index.phpSHRiMP: http://compbio.cs.toronto.edu/shrimp/SHORE (1001genomes.org): http://1001genomes.org/downloads/shore.htmlCloudBurst (Highly Sensitive Short Read Mapping with MapRe...3620 days ago