Results for "sequence analysis"
Blogs
LiftOver is a necesary step to bring all genetical analysis to the same reference build. Lift...bed The outformat is as follow: Deleted in new: Sequence intersects no chains Partially deleted in new: Sequence insufficiently intersects one...2171 days ago
- ...no-deprecated -m64 -g -O2 -MT sequenceUtil.o -MD -MP -MF .deps/sequenceUtil.Tpo -c -o sequenceUtil.o...Spines -fopenmp -c ./analysis/AACodons.cc -o obj/analysis/AACodons.o g++ -W -Wall -Wn...nalysis/NonRedKmerTable.o obj/analysis/sequenceUtil.o obj/analysis/stacktrace...
2144 days ago
List of motif discovery tools !
In genetics, a sequence motif is a nucleotide or amino-acid sequence pattern that is widespread an...ons in neuropeptide precursor sequences. Non-Redundant Patent S...n ANnotation Diagram ORiented Analysis Find information about prote...2004 days ago
Understanding reads mapping and flags !
Linear Alignment: An alignment of a read to a single reference sequence that may include insertions, deletions, skips and clipping,&nbs...lign to multiple positions, we can find one alignmnet position which sequence...1848 days ago
- This is an extract of taxdump-readme.txt to be found at ftp://ftp.ncbi.nih.gov/pub/taxonomy/ The content of the...ineage hidden subtree root flag (1 or 0) -- 1 if this subtree has no sequence...
1559 days ago
10 NGS services companies around the globe !
...ailored projects that allow access to genomic sequence information. The Compan...elines and workflows, compute resources, data analysis reports, and case studies. GA...onstruction, genome research, and bioservices analysis system consulting services. M...1270 days ago
Bioinformatics tools for telomere to telomere assembly !
...;@GenomeRIK)● pbaa (PacBio Amplicon Analysis) – separates complex mi...o cluster and generate high-quality consensus sequences from HiFi reads (Zev Kronenb...while detecting polymorphic sites within the sequences and removing potential chime...1003 days ago
Protocol for De novo Genome Assembly using Illumina Reads
...s knowledge of the source DNA sequence length, structure or composit...d topics, identifying the DNA sequence of an organism is useful. Awa...utshell the protocol: Get the sequence file(s) read from the sequenc...Frequent command use for the analysis are at: https://bioinformati...1215 days ago
Ancient whole genome duplication (WGD) detection tools !
...etection, one is collinearity analysis, and the other is based on th...ave posted articles about the analysis process of WGD. I searched fo...t conda activate wgdstart our analysis environment, and then start t...l-vs-ALl + MCL classification analysis. mix: Hybrid modeling of Ks...1166 days ago
Frequently used bioinformatics tools for viral genome analysis !
IVA: accurate de novo assembly of RNA virus genomes. Hunt M, Gall A, Ong SH...s/btv120. Epub 2015 Feb 28. Adapter sequences: Optimal enzymes for amplify...raken: Kraken: ultrafast metagenomic sequence classification using exact al...Res. 39, e57 (2011). SAMtools: The Sequence...1058 days ago
