Results for "sequence analysis"
Bookmarks
MEDEA: Comparative Genomic Visualization with Adobe Flash
As the number of sequence and annotated genomes grows larger, the need to understand, compare, and contrast the data becomes increasingly important. Using the power of t...2942 days ago
GATB : Genome Analysis Toolbox with de-Bruijn graph
The Genome Analysis Toolbox with de-Bruijn graph (GATB) provides a set of highly efficient algorithms to analyse NGS data sets. These methods enable the analysis of data sets of any size on m...2940 days ago
- AccNET is a Perl application that presents a new way to stu...a bipartite network compatible with common network analysis platforms. AccNET collects ph...functional information in a network improving the analysis capability. Networks offer a...
2778 days ago
YASS :: genomic similarity search tool
YASS is a genomic similarity search tool, for nucleic (DNA/RNA) sequences in fasta or plain text format (it produces...istic pairwise local alignment tools for DNA sequences (FASTA, BLAST, PATTERNHUNTER...score and E-value evaluated according to the sequence...2936 days ago
- Cutadapt finds and removes adapter sequences, primers, poly-A tails and other types of unwanted sequence from your high-throughput sequencing re...ead is longer than the molecule that is sequenced. Amplicon reads start with a...tasks by finding the adapter or primer sequence...
2925 days ago
- Platanus is a novel de novo sequence assembler that can reconstruct genomic sequences of highly heterozygous diploids from massively parallel shotgun sequencing data. The latest version is 1....
2925 days ago
SATSUMA : Highly sensitive whole-genome synteny alignments.
Satsuma is a whole-genome synteny alignment program. It takes two genomes, computes align...protein coding genes, non-coding genes, or neutral sequences. Satsuma does not require an...010). Genome-wide synteny through highly sensitive sequence...2925 days ago
Hagfish - assess an assembly through creative use of coverage plots
Hagfish is a tool that is to be used in data analysis of Next Generation Sequencing (NGS) experiments. Hagfis...on in a genome re-sequencing experiment. Hagfish requires a reference sequence and a paired end re...2918 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
MOSAIK is a stable, sensitive and open-source program for mapping second and third-generation sequencing reads to a...l variant (SV) discovery, MOSAIK provides explicit support for handling known-sequence...2918 days ago
- gkno opens the world of complex bioinformatic analysis to people of all level of computational expertise. This site contains documentation, tutorials and information on all the tools that comprise gkno. http://gkno.me/how-to/install.html http://gkno.me/software.html
2918 days ago
