Comment on "Want to Know which genome assembler rule the world ?"
Canu Assembler is my personal favourate.Canu is a fork of the Celera Assembler, designed for high-noise single-molecule sequencing (such as the PacBio RS II/Sequelor Oxford Nanopore MinION).1944 days ago
Comment on "nanofilt: Filtering and trimming of long read sequencing data"
Nanofilt steps https://gigabaseorgigabyte.wordpress.com/2017/06/05/trimming-and-filtering-oxford-nanopore-sequencing-reads/2033 days ago
2131 days ago
Comment on "Run miniasm assembler on nanopore reads !"
...r analyzing PacBio data. Minimap only accepts two FASTQ files and you need to map your FASTQ file against itself. So, if you have multiple FASTQ sequencing files, you have to concatenat...2161 days ago
Comment on "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads"
...lt;= 0 loads the entire file. [1024] General-purpose pre-set options: -x, --preset STR Pre-set parameters to increase sensitivity for different sequencing technologies. Valid options a...2286 days ago
Comment on "Important Journals, Blogs and Forums for Bioinformaticians"
... Getting Genetics Done Gigabase or gigabyte Genome Spot CoreGenomics The Genome Factory RajLab Omics! Omics! Next-Gen Sequencing Blasted Bioinformatics!?...2314 days ago
Comment on "Genome Assembly Tutorial"
This totorial is also very informative http://www.imperial.ac.uk/bioinformatics-data-science-group/resources/software/next-generation-sequencing-ngs-software/de-novo-assembly/2686 days ago
Comment on "Structural variation: the hidden genomic treasure"
I like this tool GRIDSS: the genomic rearrangement identification software suite. A high-speed next-gen sequencing structural variation caller. GRIDSS calls variants based on...2696 days ago
Comment on "Comparative genomics educational material and papers bookmarks"
...d, Panthera pardus orientalis, an endangered sub-species of leopard found in southern Russia and northern China. https://www.genomeweb.com/sequencing/amur-leopard-genome-sequenced...2727 days ago
Comment on "Next Generation Sequencing (NGS) Tutorials"
A field guide to whole-genome sequencing, assembly and annotation http://onlinelibrary.wiley.com/doi/10.1111/eva.12178/full2869 days ago